BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZA07RM1.SCF screened BAC_end
(1003 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1791 898 0.0
>3x_Contig1791
Length = 39945
Score = 898 bits (453), Expect = 0.0
Identities = 533/553 (96%), Gaps = 5/553 (0%)
Strand = Plus / Minus
Query: 39 aagagtttaacgtatatatcaagtctttcgttttgatatgataccatttctattcttttt 98
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 20126 aagagtttaacgtatatatcaagtctttcgttttgatatgagaccatttctattcttttt 20067
Query: 99 attataccattgacatgatcgattaagtttgatctattctttgttgataagggtaccgtg 158
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 20066 attataccattgacatgatcgattaagtttgatctagtctttgttgataagggtaccgtg 20007
Query: 159 tcaaggtatatgttaagctgtgagtgtagcgaataccatttcgacatattctgttcatgg 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20006 tcaaggtatatgttaagctgtgagtgtagcgaataccatttcgacatattctgttcatgg 19947
Query: 219 ttacttttcagctttagtattttatcttctactgatgtccttctttgtaccacaaatgta 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19946 ttacttttcagctttagtattttatcttctactgatgtccttctttgtaccacaaatgta 19887
Query: 279 ttacgcattccggcgatttctatttcacatccatcgatgctgccggagaaataaatagag 338
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19886 ttacgcagtccggcgatttctatttcacatccatcgatgctgccggagaaataaatagag 19827
Query: 339 tttttccaggctaatgcctctgttctattcctaaacattatatcacgtttttggctttga 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19826 tttttccaggctaatgcctctgttctattcctaaacattatatcacgtttttggctttga 19767
Query: 399 ttcacaatggataaaacattggggtcagtattcttgttttccgttaagaatatgttgtta 458
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 19766 ttcacaatggataaaacattggggtcagtattcttgttttccgttaagaataggttgtta 19707
Query: 459 caatattccatttcgtacatcgaatatagcggttgatataaatcaatgatgtaattttga 518
||||||||||||||||||| |||| | ||||||||| |||||||||| |||||| |||||
Sbjct: 19706 caatattccatttcgtacagcgaagaaagcggttgagataaatcaataatgtaa-tttga 19648
Query: 519 gggcttatttaattgatctatgtgcgagtctttggattcagccatggacatgctatcaga 578
|| |||| |||||| ||||| || ||| ||||||||| |||||| ||||||||||||| |
Sbjct: 19647 ggtcttagttaattcatcta-gttcga-tctttggatccagcca-ggacatgctatca-a 19592
Query: 579 agaaaaatgggaa 591
|||||||| ||||
Sbjct: 19591 agaaaaataggaa 19579
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6513
Number of Sequences: 1807
Number of extensions: 6513
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 1003
length of database: 10,358,551
effective HSP length: 16
effective length of query: 987
effective length of database: 10,329,639
effective search space: 10195353693
effective search space used: 10195353693
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)