BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZA08FM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1330 1342 0.0
>3x_Contig1330
Length = 7703
Score = 1342 bits (677), Expect = 0.0
Identities = 748/761 (98%), Gaps = 8/761 (1%)
Strand = Plus / Plus
Query: 89 ctttcctgtattcggatacaaagatgtaaaaaatttgctattattctttcaaagtgtcag 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4939 ctttcctgtattcggatacaaagatgtaaaaaatttgctattattctttcaaagtgtcag 4998
Query: 149 ttatttaccgaattgtttcgacaaaagatcaaacttctctgttaagttcttaccgaaaac 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4999 ttatttaccgaattgtttcgacaaaagatcaaacttctctgttaagttcttaccgaaaac 5058
Query: 209 tatatcaacaactggaaagctcctttcctccttggatgaaaaatgttcactctccaaatt 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5059 tatatcaacaactggaaagctcctttcctccttggatgaaaaatgttcactctccaaatt 5118
Query: 269 gaattctttgcacaaattttatcacactttgttggacctggtgaagttctatcagacctg 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5119 gaattctttgcacaaattttatcacactttgttggacctggtgaagttctatcagacctg 5178
Query: 329 tgaatcaataatcctacatggtatggttgccgatgacaatactacttcgccataccaaga 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5179 tgaatcaataatcctacatggtatggttgccgatgacaatactacttcgccataccaaga 5238
Query: 389 cttgcttcaagcgtggaatgcacaacttagaggacaagtgaagacagcatcagctattta 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5239 cttgcttcaagcgtggaatgcacaacttagaggacaagtgaagacagcatcagctattta 5298
Query: 449 ctattctatattacacaatgatttaggaaacagggaattgaagttactgtcattattaca 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5299 ctattctatattacacaatgatttaggaaacagggaattgaagttactgtcattattaca 5358
Query: 509 tctatacgccatcacgttggctgaaatttcagagtgtgatacaggaaacgacgatctgca 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5359 tctatacgccatcacgttggctgaaatttcagagtgtgatacaggaaacgacgatctgca 5418
Query: 569 cacattaacaaccaaggctaatcaattggtttctcaattggatcttctattaaatacctc 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5419 cacattaacaaccaaggctaatcaattggtttctcaattggatcttctattaaatacctc 5478
Query: 629 agtttttagtgctagtacagtttggcgcagtacaaaattattattggtaataatgggaag 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5479 agtttttagtgctagtacagtttggcgcagtacaaaattattattggtaataatgggaag 5538
Query: 689 attcgagcctttcaccaaaaacccacatgcttgcaatcagaacacattactttttaaatg 748
||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||
Sbjct: 5539 attcgagcctttcaccaaaaacccacaagcttccaatcagaacacattac-ttttaaatg 5597
Query: 749 agttagagcaatatttttgcaagaaaatatgtttattacctgccggacgatttacccact 808
||||||||||||| |||||| || ||||| |||||||||||| ||||||||||||||||
Sbjct: 5598 agttagagcaata-ttttgc-aggaaata-gtttattacctg-cggacgatttacccac- 5652
Query: 809 aagtaatgcaacctgtcaaaaattaataaatcgttactgct 849
|||||| || ||||||| |||||||| ||||||||||||||
Sbjct: 5653 aagtaaggc-acctgtc-aaaattaaaaaatcgttactgct 5691
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7306
Number of Sequences: 1807
Number of extensions: 7306
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)