BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZA08RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1625 1461 0.0
>3x_Contig1625
Length = 13618
Score = 1461 bits (737), Expect = 0.0
Identities = 824/843 (97%), Gaps = 8/843 (0%)
Strand = Plus / Plus
Query: 44 cttgttttgatctagctagatattcgaattgatctgatc-aggtggtcgattcataataa 102
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 11694 cttgttttgatctagctagatattcgaattgatctgatccaggtggtcgattcataataa 11753
Query: 103 accatccataacaaaccattcacgcacaccatctatgtaaactacccatgttcatgtaaa 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11754 accatccataacaaaccattcacgcacaccatctatgtaaactacccatgttcatgtaaa 11813
Query: 163 cactgaacaagaatgttgtgctggaataacaaaaaagacctactcacaactttatttgct 222
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 11814 cactgaacaagaatgttgtgctggaataacaaaaaagacctactcacaacttcatttgct 11873
Query: 223 accacgatagtctgatttctgtacaatcacggcttctccaacctctccaatggcaacaat 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11874 accacgatagtctgatttctgtacaatcacggcttctccaacctctccaatggcaacaat 11933
Query: 283 gaaccatcaatggcaacaatgaaccatcaatggcaaagtacgaacaatgctaaagcacaa 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11934 gaaccatcaatggcaacaatgaaccatcaatggcaaagtacgaacaatgctaaagcacaa 11993
Query: 343 caacggagagagtgtaaaaaaaaaggaaaagaaagaaagaaatccgggaaaaagagaaac 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11994 caacggagagagtgtaaaaaaaaaggaaaagaaagaaagaaatccgggaaaaagagaaac 12053
Query: 403 catacatcatcgactggttcctgaattgttcctgaaaaagcttaaacctaaacccacccc 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12054 catacatcatcgactggttcctgaattgttcctgaaaaagcttaaacctaaacccacccc 12113
Query: 463 tggtctgttcctgatgacgccacgatagactgcggaaaactagattccggcgacctaata 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12114 tggtctgttcctgatgacgccacgatagactgcggaaaactagattccggcgacctaata 12173
Query: 523 tttatcactatatacgtaaaccctttaaattctctcatgctggctctaaaatgctggttt 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12174 tttatcactatatacgtaaaccctttaaattctctcatgctggctctaaaatgctggttt 12233
Query: 583 ggaaatgctgggttatgatccaaaaatgntaacaatacagaaaatagatagcctaaacta 642
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 12234 ggaaatgctgggttatgatccaaaaatgtaaacaatacagaaaatagatagcctaaacta 12293
Query: 643 taaaatcctgtggcagcaggtcctgatgttgttacattcccccacggctgaactttatgt 702
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 12294 taaaatcctgtggcagcaggtcctgatgttgttacattccccaacggctgaactttaggt 12353
Query: 703 caatcggccaacanatataacacatggtaatttcaaaagtagcttctttcct-ataaccc 761
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 12354 caatcggccaacaaatataacacatggtaatttcaaaagtagcttctttcctaataacct 12413
Query: 762 tgctgctggctgtgatggaaatgtc-gcaaacggtatgtttacattagctcattttttag 820
|||||||||||||||||| |||||| ||||||||||||||||||||||||| ||| |||
Sbjct: 12414 tgctgctggctgtgatgg-aatgtcggcaaacggtatgtttacattagctccatttctag 12472
Query: 821 tgtaatctattttagatttaatcgggttcatttcgccaaacttggggactggtgacaagc 880
||||||||| |||||||||||||| |||||||||| ||||||| |||||| |||||||||
Sbjct: 12473 tgtaatcta-tttagatttaatcgtgttcatttcg-caaactt-gggact-gtgacaagc 12528
Query: 881 att 883
|||
Sbjct: 12529 att 12531
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7440
Number of Sequences: 1807
Number of extensions: 7440
Number of successful extensions: 85
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)