BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZA09FM1.SCF screened BAC_end
(843 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1527 472 e-133
>3x_Contig1527
Length = 8131
Score = 472 bits (238), Expect = e-133
Identities = 251/254 (98%), Gaps = 1/254 (0%)
Strand = Plus / Minus
Query: 87 tgcttcctcatcatcacagatgagtggagcattcagctcttctgcagaaggatatggacc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6718 tgcttcctcatcatcacagatgagtggagcattcagctcttctgcagaaggatatggacc 6659
Query: 147 tgtacccatcacagacacttcggtatatgattgttagaagatggtaatagagcggtgtac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6658 tgtacccatcacagacacttcggtatatgattgttagaagatggtaatagagcggtgtac 6599
Query: 207 ctatagtatgtctatgataggccagtacgtttaggttgtgacccacgtcttaacaataac 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6598 ctatagtatgtctatgataggccagtacgtttaggttgtgacccacgtcttaacaataac 6539
Query: 267 attaactcttactcgaagcggttttttcagtttcataaacaccgaaaaatctaaaaacat 326
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 6538 attaactcttactcgaagcggttttttcagtttcataaacaccggaaaatctaaaaaca- 6480
Query: 327 tatcaaaatttagt 340
|||||||| |||||
Sbjct: 6479 tatcaaaaattagt 6466
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 50,184
Number of Sequences: 1807
Number of extensions: 50184
Number of successful extensions: 6685
Number of sequences better than 1.0e-20: 1
length of query: 843
length of database: 10,358,551
effective HSP length: 16
effective length of query: 827
effective length of database: 10,329,639
effective search space: 8542611453
effective search space used: 8542611453
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)