BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC31ZA09RM1.SCF screened BAC_end
         (916 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1666                                                        1219   0.0  

>3x_Contig1666 
          Length = 16162

 Score = 1219 bits (615), Expect = 0.0
 Identities = 721/753 (95%), Gaps = 3/753 (0%)
 Strand = Plus / Plus

                                                                       
Query: 158 tttttgacatcggtaagaatcgcaactgcatcgatatctttgctgagggagtggctttca 217
           ||||||| || ||||||||| | || || || ||||| |||| ||||||||||| ||| |
Sbjct: 89  tttttgaaataggtaagaatagaaaatgaatagatatatttgatgagggagtggatttaa 148

                                                                       
Query: 218 tctagtaacagcaaacacatcaatgcaagatgtacatcctgaaaacaccaaatggtcgga 277
           | |||||| || ||| |||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 149 tatagtaaaagaaaaaacataaatgcaagatgtaca-cctgaaaacaccaaatggtcgga 207

                                                                       
Query: 278 caaaaacttgaacttctcaaaaggacaatttacaatagcagtcaatcctaagtgtgcatg 337
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 caaaaacttgaacttctcaaaaggacaatttacaatagcagtcaatcctaagtgtgcatg 267

                                                                       
Query: 338 ctccagtataaaaga-cacttgggctggtaatattgatgcaacaactttcttcagtggat 396
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ctccagtataaaagagcacttgggctggtaatattgatgcaacaactttcttcagtggat 327

                                                                       
Query: 397 aagtcaaatttaagtaatctgctatagctgtcttggtggaatttgttgcagaattaaaca 456
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aagtcaaatttaagtaatctgctatagctgtcttggtggaatttgttgcagaattaaaca 387

                                                                       
Query: 457 aaggcagattgtctggaggatgtgtggttacatagtgtttatgataccacgaatagtgaa 516
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aaggcagattgtctggaggatgtgtggttacatagtgtttatgataccacgaatagtgaa 447

                                                                       
Query: 517 ccaaacagatactatagtgataattaaattccacaaattgggtcacaggttgagtgaaca 576
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ccaaacagatactatagtgataattaaattccacaaattgggtcacaggttgagtgaaca 507

                                                                       
Query: 577 aataattccattgttctaaccaacctttaagtttagacaacactgtattcaaaggttgtt 636
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aataattccattgttctaaccaacctttaagtttagacaacactgtattcaaaggttgtt 567

                                                                       
Query: 637 ggtcagatatgtcaaagaactccaaacttcgaataaacttataaactatccgagtgagtt 696
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ggtcagatatgtcaaagaactccaaacttcgaataaacttataaactatccgagtgagtt 627

                                                                       
Query: 697 caatctctgccaccattctttcgtcataattcgtggaatgcggcagttccaaagtgaagt 756
           |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||  |
Sbjct: 628 caatctctgccaccattcttccgtcaaaattcgtggaatgcggcagttccaaagtgagtt 687

                                                                       
Query: 757 tacacatttctaaaactctatcgtcaattgtacacattctaccgnatgccacacagttgt 816
           ||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 688 tacacatttctaaacttctatcgtcaattgtacacattctaccggatgccacacagttg- 746

                                                                       
Query: 817 tttatatggcaatgacatagatggntccaaagtctcgcaaacgataattgttcgaattct 876
           |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 747 tttatatggcaatgacatagatggttccaaagtctcgcagacgataattgttcgaattct 806

                                            
Query: 877 tctgtttctttcgacacgctattgtttaatgtg 909
           ||||||||||   ||||||||||||| ||||||
Sbjct: 807 tctgtttcttcgaacacgctattgttaaatgtg 839


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6367
Number of Sequences: 1807
Number of extensions: 6367
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)