BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZA10FM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1801 955 0.0
>3x_Contig1801
Length = 57606
Score = 955 bits (482), Expect = 0.0
Identities = 594/621 (95%), Gaps = 9/621 (1%)
Strand = Plus / Minus
Query: 75 taatacctgcatcttgcacatttttaatggtttgcaatctatcgtcatatgatctggtag 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14048 taatacctgcatcttgcacatttttaatggtttgcaatctatcgtcatatgatctggtag 13989
Query: 135 atatcacctttgggtaatgttccctcgaggtatcgatgttatggttataagcagtcaaac 194
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13988 agatcacctttgggtaatgttccctcgaggtatcgatgttatggttataagcagtcaaac 13929
Query: 195 cagcgtccttcaactgtttcgcttgagtttcatccaccattcccaatgtcacgcatgatt 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 13928 cagcgtccttcaactgtttcgcttgagtttcatccaccattcccaatgtcacgcaggatt 13869
Query: 255 ccatccccatctcgttaatctttccaatcatttctccaatccttttcaatgcagattttc 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13868 ccatccccatctcgttaatctttccaatcatttctccaatccttttcaatgcagattttc 13809
Query: 315 taccacgcatttctctccaatcatcaccaatacaaaatctcgtcgacccattttctttgg 374
|||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||
Sbjct: 13808 taccacgcatttctctccaagcagcaccaagacaaaatctcgtcgacccattttctttgg 13749
Query: 375 caatttgtgcctccttgatcacttcttcgacagatatcatcttctctgctttaatacctg 434
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 13748 caatttgtgcctccttgatcacttcttcgacagatatcatcttctctgctttaagacctg 13689
Query: 435 tatcgtaacgtgaatattgcgcacaatacttacaatcttctgaacatccacctgccttga 494
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13688 tatcgtaacgtgaagattgcgcacaatacttacaatcttctgaacatccacctgccttga 13629
Query: 495 tgttcatcaatgttcacagttgcaccttggtaggatcatgccatttcctatgttggaatt 554
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 13628 tgttcatcaatgtacacagttgcaccttggtaggatcatgccatttcctatgttgtaa-t 13570
Query: 555 tgtgcctgatgcattaatttccttcaatgggcgtgtgattaattttcgcttaattgttct 614
|||||||||||||| || |||| ||||| |||||||||| ||| | ||| |||||||||
Sbjct: 13569 tgtgcctgatgcatcaa-ttccatcaat-ggcgtgtgataaatctccgc-taattgttc- 13514
Query: 615 tttggtccacacatgcttgtggttcgttcaaagattgtgcattacttattggcaggaaca 674
|||||||||||||||| |||||||||||||||||| |||||| ||| ||| |||| ||||
Sbjct: 13513 tttggtccacacatgc-tgtggttcgttcaaagatagtgcataactaatt-gcagaaaca 13456
Query: 675 tttttgcgccggcaacacttt 695
|||| |||||||||||||||
Sbjct: 13455 tttt--cgccggcaacacttt 13437
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7579
Number of Sequences: 1807
Number of extensions: 7579
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)