BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZA10RM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1611 1189 0.0
>3x_Contig1611
Length = 15286
Score = 1189 bits (600), Expect = 0.0
Identities = 641/651 (98%), Gaps = 3/651 (0%)
Strand = Plus / Plus
Query: 48 ttgtccctaatgtctacaatgtatcaattccgttttctagcaactattgctttccgccta 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6114 ttgtccctaatgtctacaatgtatcaattccgttttctagcaactattgctttccgccta 6173
Query: 108 ccagtaacaaattcctatctactattttttattgccgcgcccatttcccgttggatacag 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6174 ccagtaacaaattcctatctactattttttattgccgcgcccatttcccgttggatacag 6233
Query: 168 tccagcgctgccggaagtgtttccagttaacacgctcgtcagtctactttccactatgcg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6234 tccagcgctgccggaagtgtttccagttaacacgctcgtcagtctactttccactatgcg 6293
Query: 228 acgaatatcaataaatgttgtctactccgcataatatacggagtgacttgtcttattata 287
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6294 acgaatatcaaaaaatgttgtctactccgcataatatacggagtgacttgtcttattata 6353
Query: 288 gccgcagactgacagcattatcgtcagaaagaatcaaaaagcgacgctaggaacgaaagc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6354 gccgcagactgacagcattatcgtcagaaagaatcaaaaagcgacgctaggaacgaaagc 6413
Query: 348 agctcaggaaccaaaaaaaaatatttgacagtgggacccatggccaaattatgtactatt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6414 agctcaggaaccaaaaaaaaatatttgacagtgggacccatggccaaattatgtactatt 6473
Query: 408 agttaatcatttctggaagactctggattaacataaaatctcatctctagtagaaccaac 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6474 agttaatcatttctggaagactctggattaacataaaatctcatctctagtagaaccaac 6533
Query: 468 aatttaaccttaaccccttctctctggtaagcgctgaacgcatggccatcaggagattgt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6534 aatttaaccttaaccccttctctctggtaagcgctgaacgcatggccatcaggagattgt 6593
Query: 528 ctgatatttttaggcagggccctttctttttcaagcacagagatggaactgcccctncga 587
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 6594 ctgatatttttaggcagggccctttctttttcaagcacagagatggaactgcccctcgga 6653
Query: 588 gtta-tttttttttttttttgatattttctctttgttatcaaa-ggtaacgttcccttga 645
|||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 6654 gttattttttttttttttttgatattttctctttgttatcaaagggtaacgtttccttga 6713
Query: 646 tactggaataataccttaatttggggtgcgttttacgttttgcaatatgat 696
||||| |||||||||||||||| ||||||||||||||| | ||||||||||
Sbjct: 6714 tactgtaataataccttaattt-gggtgcgttttacgtatggcaatatgat 6763
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,714
Number of Sequences: 1807
Number of extensions: 16714
Number of successful extensions: 2287
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)