BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZA11FM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig696 1164 0.0
>3x_Contig696
Length = 2788
Score = 1164 bits (587), Expect = 0.0
Identities = 686/711 (96%), Gaps = 6/711 (0%)
Strand = Plus / Minus
Query: 89 tatcagtaagtatatataagtactgtttctgtgcataaatttccatgtatatagatattg 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1398 tatcagtaagtatatataagtactgtttctgtgcataaatttccatgtatatagatattg 1339
Query: 149 tcgttaacataaatttgcgagcttcccctttgaagatgtcccagtctatttcttgtaacc 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1338 tcgttaacataaatttgcgagcttcccctttgaagatgtcccagtctatttcttgtaacc 1279
Query: 209 cttggcaacagcttcctcgtatgttgggtagtcgatatacccttccgcagacattttgta 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1278 cttggcaacagcttcctcgtatgttgggtagtcgatatacccttccgcagacattttgta 1219
Query: 269 gaaagagggtctatcgtattgattcaatggcaaacccttttcgagacgttcaacaagatc 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1218 gaaagagggtctatcgtattgattcaatggcaaacccttttcgagacgttcaacaagatc 1159
Query: 329 tgggttggcaatgaaggctctaccgtaaccgatcaaagtgtttggattctttgagtccgt 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1158 tgggttggcaatgaaggctctaccgtaaccgatcaaagtgtttggattctttgagtccgt 1099
Query: 389 aatggcagcatctgggtccaaagcgtagttaccaactcttagcacgttacccttccaaac 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1098 aatggcagcatctgggtccaaagcgtagttaccaactcttagcacgttacccttccaaac 1039
Query: 449 agagtatacgaattcattggtaccacctttataccagccttcaaattccggttggaatgg 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1038 agagtatacgaattcattggtaccacctttataccagccttcaaattccggttggaatgg 979
Query: 509 cgatgtgacacgaggttcgactaaatcgacgtatgctaatctcttaccagcctttgccct 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 978 cgatgtgacacgaggttcgactaaatcgacgtatgctaatctcttaccagcctttgccct 919
Query: 569 cttttccaattcagcaagtacataggcgaattgagccaccaagacaggttctgaaccacc 628
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 918 cttttccaattcagcaagtacataggcgaattgagccaccaagacagggtctgaaccacc 859
Query: 629 tgacatgttacc-aatacaccgtatggggagaaatcgatac-gggtcttttggcaccaaa 686
||||||| |||| |||||||||||||| ||||| ||||| || ||||| |||||| ||
Sbjct: 858 tgacatggtaccaaatacaccgtatggtgagaatctgatactggttctttcggcacc-aa 800
Query: 687 cgtcattgacaacgggattgacgacttccaaaacgaatttagcacggttctcaatggat- 745
|| ||| |||||||| || |||||||||||| |||||| ||||||||||||||||||||
Sbjct: 799 cggcatcgacaacggcatcgacgacttccaagacgaatctagcacggttctcaatggatc 740
Query: 746 caccggattcattcaatttttttggtgggaaattgggtctaggaattgatt 796
||||| ||||| ||| || |||| || ||| ||||||||||||||||||||
Sbjct: 739 caccgtattca-tcagttctttt-gttggagattgggtctaggaattgatt 691
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5630
Number of Sequences: 1807
Number of extensions: 5630
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)