BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZA11RM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1734 1465 0.0
>3x_Contig1734
Length = 17938
Score = 1465 bits (739), Expect = 0.0
Identities = 836/862 (96%), Gaps = 6/862 (0%)
Strand = Plus / Plus
Query: 47 tgaaattggccaagacgaagtatcgtccgttcttcaactgattataagcacacaggtgcg 106
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 14596 tgaaattggccaagacgaag-atcgtccgttcttcaactgattataagcacacaggtgcg 14654
Query: 107 gtaaatgtgtcacaagagcatttgatgaagtctcaggatgctgaaattttgccaaaggag 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14655 gtaaatgtgtcacaagagcatttgatgaagtctcaggatgctgaaattttgccaaaggag 14714
Query: 167 ggagaacgtaatattttgattacgtctgctttgccatacgtcaacaacgtaccacatttg 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14715 ggagaacgtaatattttgattacgtctgctttgccatacgtcaacaacgtaccacatttg 14774
Query: 227 ggtaacattgtcggtagtgttttatctgctgatatttattctcgtttcgccaagggtaga 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14775 ggtaacattgtcggtagtgttttatctgctgatatttattctcgtttcgccaagggtaga 14834
Query: 287 aactacaacgcactatacatctgtggtaccgatgaatacggtacagcaactgagaccaag 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14835 aactacaacgcactatacatctgtggtaccgatgaatacggtacagcaactgagaccaag 14894
Query: 347 gctttggaagatggtgtcacacctcgtgaattatgtgacaaataccataaggttcattct 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14895 gctttggaagatggtgtcacacctcgtgaattatgtgacaaataccataaggttcattct 14954
Query: 407 gacgtttacaaatggttccaaatcggatttgattatttcggtagaaccactaccgaaaag 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14955 gacgtttacaaatggttccaaatcggatttgattatttcggtagaaccactaccgaaaag 15014
Query: 467 caaactgccattgctcaagacattttcatgaagttatatgatagaggctttttggaagag 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15015 caaactgccattgctcaagacattttcatgaagttatatgatagaggctttttggaagag 15074
Query: 527 cagacaatgaaacagttgtactgcccagctcacaagggttacttagctgatagatatgtg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15075 cagacaatgaaacagttgtactgcccagctcacaagggttacttagctgatagatatgtg 15134
Query: 587 gaaggtacatgtccaaaatgtggttacgaagacgctcgtggtgatcaatgtgataagtgt 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15135 gaaggtacatgtccaaaatgtggttacgaagacgctcgtggtgatcaatgtgataagtgt 15194
Query: 647 ggtgctttgttgaacccattcgaattgattgaccctcgttgtaagctagatgacggtgtt 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15195 ggtgctttgttgaacccattcgaattgattgaccctcgttgtaagctagatgacggtgtt 15254
Query: 707 cctgaaccacctgattccgaccatatcttcttgtcgttggataagcttgaacccgaaatc 766
|||||||||| ||||||||||||||||||| |||||||||||||||| ||||| ||||||
Sbjct: 15255 cctgaaccacgtgattccgaccatatcttcatgtcgttggataagctggaaccagaaatc 15314
Query: 767 aagaaatgggtcgatgaatccttttttaagggtaattggtccaagatttct-agactttc 825
|||||||||||||||||| ||| || |||||||||||||||||||| |||| ||||| ||
Sbjct: 15315 aagaaatgggtcgatgaagcctcttctaagggtaattggtccaagaattctaagactatc 15374
Query: 826 cctcaatcttgggttgaagaaaaggctttattcctgttgttttacca-agattttgggtt 884
||||||||| |||||||| || | ||| || | ||||| |||||| |||||| ||||
Sbjct: 15375 actcaatctt-ggttgaaggaaggtcttcatcctcgttgtattaccagagattt--ggtt 15431
Query: 885 tggggttctccagtgccccttg 906
|||||| |||||||||| ||||
Sbjct: 15432 tggggtactccagtgccacttg 15453
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6095
Number of Sequences: 1807
Number of extensions: 6095
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)