BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZA12FM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1515 1342 0.0
>3x_Contig1515
Length = 8855
Score = 1342 bits (677), Expect = 0.0
Identities = 769/792 (97%), Gaps = 6/792 (0%)
Strand = Plus / Minus
Query: 85 caagagggaattatgtcagaagatatcccacaatgggcgaaagatttgaaagttgacaaa 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3800 caagagggaattatgtcagaagatatcccacaatgggcgaaagatttgaaagttgacaaa 3741
Query: 145 gtgatgaggcgaaatagtgtcaatggtggtaaattgccggatccgtttggaataaagaaa 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3740 gtgatgaggcgaaatagtgtcaatggtggtaaattgccggatccgtttggaataaagaaa 3681
Query: 205 ctagagatcttttgtatataagccccctaaggtgatagatcatgacgctcaaaatcgtat 264
||||||||| | | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 3680 ctagagatcgaagg-acagaagccccctaaggtgatagatcatgacgctcaaaatcgtat 3622
Query: 265 agccaaactcactgcagaacgggcatggcagatatcttctgagcctctcaaatctgttcc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3621 agccaaactcactgcagaacgggcatggcagatatcttctgagcctctcaaatctgttcc 3562
Query: 325 catgaatataattatgtcatatatgtctggtaacagcttgcaaattattcctataatgac 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3561 catgaatataattatgtcatatatgtctggtaacagcttgcaaattattcctataatgac 3502
Query: 385 tgctgtgatgttggtctcaaatcccatcaaaagtatcttaggagttaagtcaaaatttca 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3501 tgctgtgatgttggtctcaaatcccatcaaaagtatcttaggagttaagtcaaaatttca 3442
Query: 445 acatttaatcaacaaagataatgatgtaaccccgcctgtagttgcagccatgattatgta 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3441 acatttaatcaacaaagataatgatgtaaccccgcctgtagttgcagccatgattatgta 3382
Query: 505 cgtgatataccaattaatcctcatgggaataggtttgcataagttgaattcaatgggatt 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3381 cgtgatataccaattaatcctcatgggaataggtttgcataagttgaattcaatgggatt 3322
Query: 565 gttcccaactacgtcaagtgattggcttgcttggcaacaaccaacggagtatttataccg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3321 gttcccaactacgtcaagtgattggcttgcttggcaacaaccaacggagtatttataccg 3262
Query: 625 tacgttaagtatttaattgaatgtagcgaaattaatacattatacaaaagggtctatttg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3261 tacgttaagtatttaattgaatgtagcgaaattaatacattatacaaaagggtctatttg 3202
Query: 685 ctagtattgctttgggtagaagccggggcagactctgcagtagtaggagtagtttctttt 744
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 3201 ctagtattgctttgggtagaagccggggcagactctgcagtagtaggagtagtttc-ttt 3143
Query: 745 atttttatgcttcatttcgaacaattcctgaacgttatatttncttgttatcagtcccga 804
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||
Sbjct: 3142 atttttatgcttcatttcgaacaattcctgaacgttatattt-cttgtaatcagt-ccga 3085
Query: 805 tattttttatttac-acacaacatttcgatgttggtttttaagcattggnacaacaccag 863
|| | ||||| ||| |||| ||||| |||||||| |||| |||||||| ||| ||| ||
Sbjct: 3084 taatctttatctacaacac-acattccgatgttgtttttaaagcattgcaacagcacaag 3026
Query: 864 cttatcataatt 875
||||||||||||
Sbjct: 3025 cttatcataatt 3014
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6918
Number of Sequences: 1807
Number of extensions: 6918
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)