BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC31ZA12RM1.SCF screened BAC_end
         (894 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1803                                                        1344   0.0  

>3x_Contig1803 
          Length = 52241

 Score = 1344 bits (678), Expect = 0.0
 Identities = 780/806 (96%), Gaps = 6/806 (0%)
 Strand = Plus / Minus

                                                                         
Query: 48    ttgctgcgaagaaaactctactggatctaaagaaccttccgaagtgctcttggttgattt 107
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14829 ttgctgcgaagaaaactctactggatctaaagaaccttccgaagtgctcttggttgattt 14770

                                                                         
Query: 108   ttttcgttctttacgttctttacgagattttaggtgttttgagagctcgaatagcattgc 167
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14769 ttttcgttctttacgttctttacgagattttaggtgttttgagagctcgaatagcattgc 14710

                                                                         
Query: 168   gaatgggttcttcgggtcaccaaacccacatagttgtagaatgtgcgattgagaaaatag 227
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14709 gaatgggttcttcgggtcaccaaacccacatagttgtagaatgtgcgattgagaaaatag 14650

                                                                         
Query: 228   tgaggaatgtctaaagaaatgttttaatctttctgcatcctgaatgaaaatcaaatttgg 287
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14649 tgaggaatgtctaaagaaatgttttaatctttctgcatcctgaatgaaaatcaaatttgg 14590

                                                                         
Query: 288   atcaaagaagttcccagaagaggagacaccaaatttgtgttgaaagtaatgtatgacgac 347
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14589 atcaaagaagttcccagaagaggagacaccaaatttgtgttgaaagtaatgtatgacgac 14530

                                                                         
Query: 348   attttgtaattctgatgattccagaaagcttggaagtaacatcacttctgtgtgctttaa 407
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14529 attttgtaattctgatgattccagaaagcttggaagtaacatcacttctgtgtgctttaa 14470

                                                                         
Query: 408   gtagtcaacaatgtgatttgtcctgtttccactgctgtcacgttcagcaaaagctctttg 467
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14469 gtagtcaacaatgtgatttgtcctgtttccactgctgtcacgttcagcaaaagctctttg 14410

                                                                         
Query: 468   gtagatgttatctatgactaattgcatatactgcggggaaggaacaaaaatgtcttcaca 527
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14409 gtagatgttatctatgactaattgcatatactgcggggaaggaacaaaaatgtcttcaca 14350

                                                                         
Query: 528   gaaaacagattttcccaaattgacaaatgcttccaaagtgttttggtgaactgttgacat 587
             ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 14349 gaaaacagattttcccaaattgacaaatgcttccaaagtgttttgttgaactgttgacat 14290

                                                                         
Query: 588   atgataatatagcttcccatggccaaaagtgaatttcaagctttctctgtaccaatgctc 647
             |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 14289 atgataatatagcttcccatggccaaaagtgaatttcaggctttctctgtaccaatgctc 14230

                                                                         
Query: 648   agcactaagttttcaatcaacgaattccgaaagatatagagcgattgccattctggat-a 706
             |||||||||||| |||||||||||| | ||| |||||||||||||||||||||||||| |
Sbjct: 14229 agcactaagtttccaatcaacgaatccggaaggatatagagcgattgccattctggataa 14170

                                                                         
Query: 707   attaccaagcctttcta-cccggggatggagtacttttggggttaattcttcaacat-tt 764
             || |||||||||||||| || |||||||||||||||| ||||| ||| || |||||| ||
Sbjct: 14169 atcaccaagcctttctagccaggggatggagtactttgggggtaaatcctccaacatatt 14110

                                                                         
Query: 765   tgattatgcaataaattcct-tgcgatgaattttcagc-aacctcgggatccatgaaatt 822
             |||| ||||||||||| | | |||||||||||  |||| |||||||||||||||||||||
Sbjct: 14109 tgataatgcaataaatacgtatgcgatgaattgacagcaaacctcgggatccatgaaatt 14050

                                       
Query: 823   tggaaattttttc-aaacatccaaaa 847
             || ||| || ||| ||||||||||||
Sbjct: 14049 tgaaaaattcttcaaaacatccaaaa 14024


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,747
Number of Sequences: 1807
Number of extensions: 14747
Number of successful extensions: 237
Number of sequences better than 1.0e-20: 1
length of query: 894
length of database: 10,358,551
effective HSP length: 16
effective length of query: 878
effective length of database: 10,329,639
effective search space: 9069423042
effective search space used: 9069423042
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)