BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZB01FM1.SCF screened BAC_end
(869 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig829 850 0.0
>3x_Contig829
Length = 2277
Score = 850 bits (429), Expect = 0.0
Identities = 440/443 (99%), Gaps = 1/443 (0%)
Strand = Plus / Plus
Query: 86 taaaaaataaaatagtttggcatagcacctttatgaattgattcctaataaaaactgatt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1836 taaaaaataaaatagtttggcatagcacctttatgaattgattcctaataaaaactgatt 1895
Query: 146 tcaaaaataaccaatgccagtgactaactgtaacaaattgttagaataaaagaaaacaaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1896 tcaaaaataaccaatgccagtgactaactgtaacaaattgttagaataaaagaaaacaaa 1955
Query: 206 ccattaacaatttggcatcattcggcagtaattttcaagtctttggagaaattttattta 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1956 ccattaacaatttggcatcattcggcagtaattttcaagtctttggagaaattttattta 2015
Query: 266 ctgttataaatactgacgttcttctttattttaccttcattcagttttttgatggatttt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2016 ctgttataaatactgacgttcttctttattttaccttcattcagttttttgatggatttt 2075
Query: 326 catcatcatatcatatgccttaaaattaaaaataaaggtttaaaaaccgcaatgttgcaa 385
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 2076 catcatcatatcatatgccttanaattaaaaataaaggtttaaaaaccgcaatgttgcaa 2135
Query: 386 agacaaccttcaacaacgtgatccccttatatcatctcaaatagaaggctaagagtaact 445
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2136 agacaaccttcaacaacgtgatccccttatatcatctcanatagaaggctaagagtaact 2195
Query: 446 aagccccaacaatgccatcaatccctacattagctgatgtgtgtatggtacctgtatgtt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2196 aagccccaacaatgccatcaatccctacattagctgatgtgtgtatggtacctgtatgtt 2255
Query: 506 gaatactagaactactatcatcg 528
| |||||||||||||||||||||
Sbjct: 2256 g-atactagaactactatcatcg 2277
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8211
Number of Sequences: 1807
Number of extensions: 8211
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 1
length of query: 869
length of database: 10,358,551
effective HSP length: 16
effective length of query: 853
effective length of database: 10,329,639
effective search space: 8811182067
effective search space used: 8811182067
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)