BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC31ZB02RM1.SCF screened BAC_end (858 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig801 519 e-147 >3x_Contig801 Length = 2608 Score = 519 bits (262), Expect = e-147 Identities = 307/318 (96%), Gaps = 3/318 (0%) Strand = Plus / Plus Query: 50 cacgtcgagtgatttgatacctgctgtgtgtaccaggattttttcggaccagttttgtaa 109 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 124 cacgtcgagtgatttgatacctgctgtgtgtaccaggattttttcggaccagttttgtaa 183 Query: 110 ttgttttgtttccaatttgaggcccctgtcaaaaagctcattattccttatctcgaacgg 169 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 184 ttgttttgtttccaatttgaggcccctgtcaaaaagctcattattccttatctcgaacgg 243 Query: 170 aacggaattagtgatgtcccatgtaattaaatgaccatctgttggtgcattcagaagttt 229 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 244 aacggaattagtgatgtcccatgtaattaaatgaccatctgttggtgcaatcagaagttt 303 Query: 230 caagcaattctgtaacggaatgaaagcatcgttccagatacaacaggtttcatatcttcc 289 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 304 caagcaattctgtaacggaatgaaagcaacgttccagatacaacaggtttcatatcttcc 363 Query: 290 atctatgatcaaagtgaaaagaattttgctcggtaaaggtagttgccctacttttactgg 349 |||||||||||| ||| ||||||||||||||| |||| |||| |||| |||||| |||| Sbjct: 364 atctatgatcaaggtg-aaagaattttgctcgttaaa-gtag-tgccatactttcactga 420 Query: 350 actgtcactgtttactgt 367 ||||||||||| |||||| Sbjct: 421 actgtcactgtatactgt 438 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 31,373 Number of Sequences: 1807 Number of extensions: 31373 Number of successful extensions: 2985 Number of sequences better than 1.0e-20: 1 length of query: 858 length of database: 10,358,551 effective HSP length: 16 effective length of query: 842 effective length of database: 10,329,639 effective search space: 8697556038 effective search space used: 8697556038 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)