BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC31ZB02RM1.SCF screened BAC_end
         (858 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig801                                                          519   e-147

>3x_Contig801 
          Length = 2608

 Score =  519 bits (262), Expect = e-147
 Identities = 307/318 (96%), Gaps = 3/318 (0%)
 Strand = Plus / Plus

                                                                       
Query: 50  cacgtcgagtgatttgatacctgctgtgtgtaccaggattttttcggaccagttttgtaa 109
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 cacgtcgagtgatttgatacctgctgtgtgtaccaggattttttcggaccagttttgtaa 183

                                                                       
Query: 110 ttgttttgtttccaatttgaggcccctgtcaaaaagctcattattccttatctcgaacgg 169
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 ttgttttgtttccaatttgaggcccctgtcaaaaagctcattattccttatctcgaacgg 243

                                                                       
Query: 170 aacggaattagtgatgtcccatgtaattaaatgaccatctgttggtgcattcagaagttt 229
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 244 aacggaattagtgatgtcccatgtaattaaatgaccatctgttggtgcaatcagaagttt 303

                                                                       
Query: 230 caagcaattctgtaacggaatgaaagcatcgttccagatacaacaggtttcatatcttcc 289
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 304 caagcaattctgtaacggaatgaaagcaacgttccagatacaacaggtttcatatcttcc 363

                                                                       
Query: 290 atctatgatcaaagtgaaaagaattttgctcggtaaaggtagttgccctacttttactgg 349
           |||||||||||| ||| ||||||||||||||| |||| |||| |||| |||||| |||| 
Sbjct: 364 atctatgatcaaggtg-aaagaattttgctcgttaaa-gtag-tgccatactttcactga 420

                             
Query: 350 actgtcactgtttactgt 367
           ||||||||||| ||||||
Sbjct: 421 actgtcactgtatactgt 438


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 31,373
Number of Sequences: 1807
Number of extensions: 31373
Number of successful extensions: 2985
Number of sequences better than 1.0e-20: 1
length of query: 858
length of database: 10,358,551
effective HSP length: 16
effective length of query: 842
effective length of database: 10,329,639
effective search space: 8697556038
effective search space used: 8697556038
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)