BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZB03FM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1795 1493 0.0
>3x_Contig1795
Length = 38452
Score = 1493 bits (753), Expect = 0.0
Identities = 826/842 (98%), Gaps = 7/842 (0%)
Strand = Plus / Minus
Query: 85 tgaacataaatcaataattaagtaatccgtccatttcagcacgttgctccggttattggt 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5883 tgaacataaatcaataattaagtaatccgtccatttcagcacgttgctccggttattggt 5824
Query: 145 tcgtggaagccacttgtagaagatagtccatagttttagattaaacaagaagatgttcgt 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5823 tcgtggaagccacttgtagaagatagtccatagttttagattaaacaagaagatgttcgt 5764
Query: 205 caactaaatattttcaagtaacaacggtatatttaaactggtcaaaggatagtgttcatt 264
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5763 caactaaatagtttcaagtaacaacggtatatttaaactggtcaaaggatagtgttcatt 5704
Query: 265 tatacttgtttgggatttctggagttggcggaatttcaccgtctaacggatactcaatct 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5703 tatacttgtttgggatttctggagttggcggaatttcaccgtctaacggatactcaatct 5644
Query: 325 taaatataacatgaccactgcctagtctcaaggcaacttgtccctcttgttgcaattgag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5643 taaatataacatgaccactgcctagtctcaaggcaacttgtccctcttgttgcaattgag 5584
Query: 385 ggtcactcaagttgatttgtgacacacctagttcagtatctttgctaaacttgtgatgag 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5583 ggtcactcaagttgatttgtgacacacctagttcagtatctttgctaaacttgtgatgag 5524
Query: 445 caactgctccaagaacaatacttgagtcaccagtagccttgaaatcgacaacttcgttga 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5523 caactgctccaagaacaatacttgagtcaccagtagccttgaaatcgacaacttcgttga 5464
Query: 505 attggcaaactccattttcatcagccttacgttcatgagttctatgtagatgtctaattc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5463 attggcaaactccattttcatcagccttacgttcatgagttctatgtagatgtctaattc 5404
Query: 565 tcccaccttgtgccaatgagactcttacttggacagctttgcctaagttttcagcgccaa 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5403 tcccaccttgtgccaatgagactcttacttggacagctttgcctaagttttcagcgccaa 5344
Query: 625 taatggttgctttacccttgtgtgaaccaggaattgtactacgcgagatattactagcag 684
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 5343 taatggttgctttacccttgtgtgaaccaggaattgtactacgcgagaaattactagcag 5284
Query: 685 cagacaaactcctcttatgaattgcaccatngtggatcttggatactggaatcccccttc 744
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 5283 cagacaaactcctcttatgaattgcaccat-gtggatcttggatactggaatcccccttc 5225
Query: 745 gcagatacccgta-gtgccgtttgagctcg-acagaagcgtacgaagtgttgggaacaga 802
||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 5224 gcagata-ccgtaggtgccgtttgagctcgaacagaagcgtacgaagtgttgggaacaga 5166
Query: 803 tgggtcgaatccaaaattcgacacgggagatgagctggacgttnttccgtcattatagtc 862
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||
Sbjct: 5165 tgggtcgaatccaaaattcgacacggaagatgagctggacgtttttccgtcattagagtc 5106
Query: 863 cctgctttctccgcattttttana-cncttacca-caaatcc-tttaatagacggctacc 919
|||||||||||||| |||||| | | ||||||| ||||||| |||||||||||||||||
Sbjct: 5105 cctgctttctccgccatttttagatctcttaccaccaaatccttttaatagacggctacc 5046
Query: 920 ct 921
||
Sbjct: 5045 ct 5044
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4857
Number of Sequences: 1807
Number of extensions: 4857
Number of successful extensions: 23
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)