BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZB03RM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1609 1572 0.0
3x_Contig1551 210 4e-54
3x_Contig1082 139 1e-32
>3x_Contig1609
Length = 15966
Score = 1572 bits (793), Expect = 0.0
Identities = 871/889 (97%), Gaps = 8/889 (0%)
Strand = Plus / Minus
Query: 48 tcccatccaaaaattcctttacttgaaggaagaaaaggcgaaactgacatgttgacataa 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7065 tcccatccaaaaattcctttacttgaaggaagaaaaggcgaaactgacatgttgacataa 7006
Query: 108 tcttattaaggaagcgatcctgaacgtaatggagattaaggaacaacatgcggctgctat 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7005 tcttattaaggaagcgatcctgaacgtaatggagattaaggaacaacatgcggctgctat 6946
Query: 168 gttctgagcggtaatttgacacataacagtattgttgggtgcaatcgacaaaccaagtta 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6945 gttctgagcggtaatttgacacataacagtattgttgggtgcaatcgacaaaccaagtta 6886
Query: 228 tttcctacaccccggtcttctaaacgatccatgtttctgtattaatatgattcacttatt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6885 tttcctacaccccggtcttctaaacgatccatgtttctgtattaatatgattcacttatt 6826
Query: 288 gagcttagacagatgtaagaatctcattactatgtgatatgaagctcagcagcattgaag 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6825 gagcttagacagatgtaagaatctcattactatgtgatatgaagctcagcagcattgaag 6766
Query: 348 ttgccaatccacataccgtagcaacttttatgcagtctgtaacaaaaaagaaaaataagt 407
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 6765 ttgccaatccacataccgtagcaacttttaggcagtctgtaacaaaaaagaaaaataagt 6706
Query: 408 tgggttacaacaaaggccctcgatctgacattcataacagttgaaaatgtctgatttaga 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6705 tgggttacaacaaaggccctcgatctgacattcataacagttgaaaatgtctgatttaga 6646
Query: 468 gaaggaaccttcagtgacggagaaaacaatctcgagattccagacggtggatacggatgg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6645 gaaggaaccttcagtgacggagaaaacaatctcgagattccagacggtggatacggatgg 6586
Query: 528 gttatcacatttgcattctttttgtacaatttttgtacctggggtgcaaatgctggttac 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6585 gttatcacatttgcattctttttgtacaatttttgtacctggggtgcaaatgctggttac 6526
Query: 588 gctgtataccttgctacatatttgtcccgtgatgtctttcctggcggaggcaagctagat 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6525 gctgtataccttgctacatatttgtcccgtgatgtctttcctggcggaggcaagctagat 6466
Query: 648 tatgctgctattggtggtttagcatttggagtangattattatttgcgccggtgattata 707
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 6465 tatgctgctattggtggtttagcatttggagtaggattattatttgcgccggtgattata 6406
Query: 708 tatttctctagaaattatggagttcatgttgtcattggactgggtattatttgccaatgc 767
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 6405 tatttctctagaaattatggagttcatgttgtcattggactgggtataatttgccaatgc 6346
Query: 768 gccgcttta-tattagctgcatttnccaagaagttgtggcagatttatcttacacaaggt 826
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 6345 gccgctttattattagctgcattttccaagaagttgtggcagatttatcttacacaaggt 6286
Query: 827 ctgttaatctctttcgaac-tgcatttatctgtactc--agtatgggattatta-cac-a 881
|||||||||||||||| || |||||| |||||||||| |||||||||||| || ||| |
Sbjct: 6285 ctgttaatctctttcggacttgcattaatctgtactccaagtatgggattaataccacaa 6226
Query: 882 tggttcagaaagcgtc-tac-ttaacanctggtattggcgccgtaggca 928
|||||||||||||||| ||| ||| || ||||||||||||||| |||||
Sbjct: 6225 tggttcagaaagcgtcgtactttagcagctggtattggcgccggaggca 6177
>3x_Contig1551
Length = 9073
Score = 210 bits (106), Expect = 4e-54
Identities = 237/277 (85%), Gaps = 4/277 (1%)
Strand = Plus / Minus
Query: 148 gaacaacatgcggctgctatgttctgagcggtaatttgacacataacagtattgt--tgg 205
||||||||| |||| |||||||||| |||||||||||||||||||| || |||| |||
Sbjct: 276 gaacaacatacggccgctatgttctcagcggtaatttgacacataatagacttgtgttgg 217
Query: 206 gtgcaatcgacaaaccaagttatttcctacaccccggtcttctaaacgatccatgtttct 265
||||||||||||||||| ||||||| |||||||| |||| ||| ||||||| ||||
Sbjct: 216 gtgcaatcgacaaaccagtatatttccgacaccccgatctttcaaaggatccatacttct 157
Query: 266 gtattaatatgattcacttattgagcttagacagatgtaa-gaatctcattactatgtga 324
||| ||||||||||||| ||||||||||||| | |||| ||||| || || ||||||
Sbjct: 156 atataaatatgattcactcattgagcttagacgaaagtaatgaatcccaacacgatgtga 97
Query: 325 tatgaagctcagcagcattgaagttgccaatccacataccgtagcaacttttatgcagtc 384
||||| |||||||||| ||||||| ||||||||||||| |||||||||||| ||||||
Sbjct: 96 catgaa-ctcagcagcacagaagttgtcaatccacataccatagcaacttttaggcagtc 38
Query: 385 tgtaacaaaaaagaaaaataagttgggttacaacaaa 421
||||||| |||||| |||||||||| |||||| ||||
Sbjct: 37 tgtaacagaaaagacaaataagttgagttacagcaaa 1
>3x_Contig1082
Length = 4646
Score = 139 bits (70), Expect = 1e-32
Identities = 139/155 (89%), Gaps = 7/155 (4%)
Strand = Plus / Plus
Query: 781 agctgcatttnccaagaagttgtggcagatttatcttacacaaggtctgttaatctcttt 840
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 agctgcatttttccagaagttgtggcagatttatcttacacaaggtctgttaatctcttt 64
Query: 841 cgaac-tgcatttatctgtactc--agtatgggattatta-cac-atggttcagaaagcg 895
|| || |||||| |||||||||| |||||||||||| || ||| |||||||||||||||
Sbjct: 65 cggacttgcattaatctgtactccaagtatgggattaataccacaatggttcagaaagcg 124
Query: 896 tc-tac-ttaacanctggtattggcgccgtaggca 928
|| ||| ||| || ||||||||||||||| |||||
Sbjct: 125 tcgtactttagcagctggtattggcgccggaggca 159
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6127
Number of Sequences: 1807
Number of extensions: 6127
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 3
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)