BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZB04FM1.SCF screened BAC_end
(880 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1706 1435 0.0
>3x_Contig1706
Length = 16303
Score = 1435 bits (724), Expect = 0.0
Identities = 781/792 (98%), Gaps = 6/792 (0%)
Strand = Plus / Plus
Query: 87 aatagcagattcaaaaatatctcttttttgctctttagtgatatcagctttgagtgccac 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10324 aatagcagattcaaaaatatctcttttttgctctttagtgatatcagctttgagtgccac 10383
Query: 147 atccagatatatatcccaaatagacttcgatacgcttggaggaaaaatctcaacactcct 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10384 atccagatatatatcccaaatagacttcgatacgcttggaggaaaaatctcaacactcct 10443
Query: 207 ttcgaaaacagccaaagcttctgcttgatggccagaagattcatttaataacgcataatt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10444 ttcgaaaacagccaaagcttctgcttgatggccagaagattcatttaataacgcataatt 10503
Query: 267 aataaacatggctggtgttgctgccttgatgagtattgctgtttcatacgcatttacagc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10504 aataaacatggctggtgttgctgccttgatgagtattgctgtttcatacgcatttacagc 10563
Query: 327 tgtaccatagtttcctttgacctccaataagtcaaggtacattgcccataagcgtttaga 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10564 tgtaccatagtttcctttgacctccaataagtcaaggtacattgcccataagcgtttaga 10623
Query: 387 tgagaaaattgctgcttgtgctggcgattctcctttctcaaatttttgtaggagtaattc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10624 tgagaaaattgctgcttgtgctggcgattctcctttctcaaatttttgtaggagtaattc 10683
Query: 447 atgattatctggtatttctaatacaacggacaaaacttttatggcatcgtcaatgcttct 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10684 atgattatctggtatttctaatacaacggacaaaacttttatggcatcgtcaatgcttct 10743
Query: 507 ttttagtctgtattcacaccaatataaccaaacattttcaagatctactaaaaatttgaa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10744 ttttagtctgtattcacaccaatataaccaaacattttcaagatctactaaaaatttgaa 10803
Query: 567 agggacgttagtggctttgtccagcaagacctcggatttttcaatatcctcttcaaaaag 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10804 agggacgttagtggctttgtccagcaagacctcggatttttcaatatcctcttcaaaaag 10863
Query: 627 tctgcaatattgacaccataattctcctaatagccctggagtagtctgaagtctatagtc 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10864 tctgcaatattgacaccataattctcctaatagccctggagtagtctgaagtctatagtc 10923
Query: 687 cacggtaagaacagcatctgcataaactttagctttatcagagatggtatcaaaaagctt 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10924 cacggtaagaacagcatctgcataaactttagctttatcagagatggtatcaaaaagctt 10983
Query: 747 cactcgttctagccacaatttgatgttggtggggttctcggcctcaattctaagtcggtt 806
||||||||||||||||||||||||||| || |||||||| ||||||||||||||||| ||
Sbjct: 10984 cactcgttctagccacaatttgatgtt-gttgggttctc-gcctcaattctaagtcgttt 11041
Query: 807 aatctaatagtggggtntttttattaatgaaggttagattgtcggcatgttattcttata 866
|||||||||||| ||| |||||||||||| |||||||| |||||||||| || ||||||
Sbjct: 11042 aatctaatagtgtggt-tttttattaatg-aggttagagtgtcggcatg-tagtcttat- 11097
Query: 867 atttgcgaacag 878
||||||||||||
Sbjct: 11098 atttgcgaacag 11109
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6037
Number of Sequences: 1807
Number of extensions: 6037
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 880
length of database: 10,358,551
effective HSP length: 16
effective length of query: 864
effective length of database: 10,329,639
effective search space: 8924808096
effective search space used: 8924808096
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)