BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZB06FM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1567 1287 0.0
>3x_Contig1567
Length = 11673
Score = 1287 bits (649), Expect = 0.0
Identities = 768/802 (95%), Gaps = 5/802 (0%)
Strand = Plus / Plus
Query: 89 accaaatatgcacacacacactgattcaaggcacgaggggtgcagcaccaacgtggttac 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4777 accaaatatgcacacacacactgattcaaggcacgaggggtgcagcaccaacgtggttac 4836
Query: 149 gaacgtgtgattagcgtggtggcaataagataatatattatgggtgtatttgaatcatgg 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4837 gaacgtgtgattagcgtggtggcaataagataatatattatgggtgtatttgaatcatgg 4896
Query: 209 aaggacactgcgtaaaggtatcgcatgcgatgcctttttgcaatgtctgttttacgtaat 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4897 aaggacactgcgtaaaggtatcgcatgcgatgcctttttgcaatgtctgttttacgtaat 4956
Query: 269 atttcgatacactttagtatcagatttcagggtgtgatagtgccctaaaacggcaagcaa 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4957 atttcgatacactttagtatcagatttcagggtgtgatagtgccctaaaacggcaagcaa 5016
Query: 329 ctgacagcagccactaatcagatttttatcggatcaacgaaccaagcattcgggctgtgc 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5017 ctgacagcagccactaatcagatttttatcggatcaacgaaccaagcattcgggctgtgc 5076
Query: 389 attgtcttggtcgaagtgatggccattatgcatacaataactggcagtgccaaggatcgg 448
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 5077 attgtcttggtcgaagtgatggccattaggcatacaataactggcagtgccaaggatcgg 5136
Query: 449 ctgtaacggaattttgaattccggccgacaggaagctctggtagggtaacatatcaaatg 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5137 ctgtaacggaattttgaattccggccgacaggaagctctggtagggtaacatatcaaatg 5196
Query: 509 aaatgagatgaaaaggatggtatataatcacgtgcacaggactgtggcacagacacccat 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5197 aaatgagatgaaaaggatggtatataatcacgtgcacaggactgtggcacagacacccat 5256
Query: 569 acaccagttatattaagtttaacactggatgaaatgtatattntccacattaggatatag 628
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 5257 acaccagttatattaagtttaacactggatgaaatgtatattttccacattaggaaatag 5316
Query: 629 cacgtggtataaaatcgatgtcttttccctttcacgagccagattntttatacgagatgg 688
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 5317 cacgtggtataaaatcgatgtcttttccctttcacgagccagattttttaaacgagatgg 5376
Query: 689 atgctaacgggagattggctggacngacgcacagcaaagggcggagttcgcgccagagct 748
|||||||||| ||||||||||||| |||||||||||| ||||||||| ||||| |||||
Sbjct: 5377 atgctaacgg-agattggctggacggacgcacagcaa-gggcggagtccgcgcaggagct 5434
Query: 749 aagcttattcgagtgtttttctaagcagggatggggcaagtttaattcctttttaacttg 808
| ||||| ||||||||||| ||| |||||||||||||| ||| | | ||||| ||||| |
Sbjct: 5435 aggcttagtcgagtgttttcctaggcagggatggggcaggttcagt-cctttctaactcg 5493
Query: 809 aaccggttccttttgaaattcacttgcttgatgccttggaagaaccgaacattggac-at 867
||||| | ||| | || |||||||||||||||| |||||||| | ||||||||||| ||
Sbjct: 5494 aaccgct-cctctgaaatttcacttgcttgatgcattggaagatcggaacattggacaat 5552
Query: 868 ttctcactttaatttttcatgc 889
|||||||||||| | ||||||
Sbjct: 5553 atctcactttaatatgtcatgc 5574
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5303
Number of Sequences: 1807
Number of extensions: 5303
Number of successful extensions: 29
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)