BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZB06RM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1107 1540 0.0
>3x_Contig1107
Length = 6096
Score = 1540 bits (777), Expect = 0.0
Identities = 878/899 (97%), Gaps = 11/899 (1%)
Strand = Plus / Plus
Query: 46 caattctatcaccagatgtaccagaaacggtgaacacaactcctgcagttagaaaacgct 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1879 caattctatcaccagatgtaccagaaacggtgaacacaactcctgcagttagaaaacgct 1938
Query: 106 ctgagtccggcgtcctcggacctactgctcctaaaccaaaatcaccagttccacaacaag 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1939 ctgagtccggcgtcctcggacctactgctcctaaaccaaaatcaccagttccacaacaag 1998
Query: 166 atgccaatacagatcctccaagagtattgtccttgcagtctcagttaagttcagagacgc 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1999 atgccaatacagatcctccaagagtattgtccttgcagtctcagttaagttcagagacgc 2058
Query: 226 aaagtgacactgatcctgatgttgggtctgtagaagttgttcagtatagaacttcgccga 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2059 aaagtgacactgatcctgatgttgggtctgtagaagttgttcagtatagaacttcgccga 2118
Query: 286 caaaaggtgatgtaaaaaaatacgctgttggaaccaacttgagatcctcatcggactatg 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2119 caaaaggtgatgtaaaaaaatacgctgttggaaccaacttgagatcctcatcggactatg 2178
Query: 346 aaaattattcaccatctatcatgcataacacaggtgctgagccttcgcctaaacctaact 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2179 aaaattattcaccatctatcatgcataacacaggtgctgagccttcgcctaaacctaact 2238
Query: 406 ccttgtcagatacgacgcacttcgataaatccatagatgtaataactgacgctgataaaa 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2239 ccttgtcagatacgacgcacttcgataaatccatagatgtaataactgacgctgataaaa 2298
Query: 466 gccctgtcactttaagtgaacctgctcgtattgtttctgaaaagaatgaaaacaacattc 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2299 gccctgtcactttaagtgaacctgctcgtattgtttctgaaaagaatgaaaacaacattc 2358
Query: 526 tgaaagaattacttgaagagttgaagcaattgaaggaggatactgtgaccagtgctacta 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2359 tgaaagaattacttgaagagttgaagcaattgaaggaggatactgtgaccagtgctacta 2418
Query: 586 gtgcaaacagcagaataatggaattggaactagaaaatacagaattaaagcaattgaacc 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2419 gtgcaaacagcagaataatggaattggaactagaaaatacagaattaaagcaattgaacc 2478
Query: 646 aattaagtcacttgaatgacatgattaagcaccaaacagaagtaattggccaagctac-a 704
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 2479 aattaagtcacttgaatgacatgattaagcaccaaacagaagtaatt-gccaagctacaa 2537
Query: 705 tcagaagtcgatttatatgagaaatatgtgggatttggaatcaaagtatatcgtattatc 764
|||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 2538 tcagaagtcgataataaggagaaatatgt-ggatttggaatcaaagtatatcgtattatc 2596
Query: 765 tgagaaatatgagtctctcacgaaagaactcgattcgaagaaccagttcatcaatggaaa 824
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 2597 tgagaaatatgagtctctcacgaaagaactcgattcgaagaaacagttcatcaatgaaaa 2656
Query: 825 catanaaaaatgtagtggaatcgttggacactttgctcgatggcatgatgacagaa--ca 882
|||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 2657 cataaaaaaatgtagt-gaatcgttggacactttgctcgatggcatga-gacagaaacaa 2714
Query: 883 aaagcttacg-aacagttgt-accaggcataaagaaac-atgaccgggtcttgatcgca 938
|||||| ||| ||||||||| ||||||||||||||||| |||||| |||||||||||||
Sbjct: 2715 aaagctcacgaaacagttgtaaccaggcataaagaaacaatgacc-ggtcttgatcgca 2772
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6472
Number of Sequences: 1807
Number of extensions: 6472
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)