BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZB07RM1.SCF screened BAC_end
(874 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1799 1562 0.0
>3x_Contig1799
Length = 39855
Score = 1562 bits (788), Expect = 0.0
Identities = 820/827 (99%), Gaps = 3/827 (0%)
Strand = Plus / Minus
Query: 50 catttttcctgggaccaagaca-cagaatgttgaaatcttccaatgttttcaggctttct 108
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 2719 catttttcctgggaccaagacaacagaatgttgaaatcttccaatgttttcaggctttct 2660
Query: 109 t-aagtactcccccatcggtggcaccgtaaaggaaatcggtgatagccatatgcgcaacc 167
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2659 tcaagtactcccccatcggtggcaccgtaaaggaaatcggtgatagccatatgcgcaacc 2600
Query: 168 atggtgtcaccaattttttcaaatttgaatatgtaatcccatttcatgttttcagtgact 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2599 atggtgtcaccaattttttcaaatttgaatatgtaatcccatttcatgttttcagtgact 2540
Query: 228 agtctgattctatccaaagaaacatggtgggttttcaatagatcaagtgtcttttcctta 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2539 agtctgattctatccaaagaaacatggtgggttttcaatagatcaagtgtcttttcctta 2480
Query: 288 gcttgttgcaatctatctgttggaacacctttcaatgaaatgtttgaaattgtcctgata 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2479 gcttgttgcaatctatctgttggaacacctttcaatgaaatgtttgaaattgtcctgata 2420
Query: 348 aaatcatcgctccaatactctgcgtcagtagcatatgggttttcgatctcaatcatttcc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2419 aaatcatcgctccaatactctgcgtcagtagcatatgggttttcgatctcaatcatttcc 2360
Query: 408 atgttgaaaggagccagtggagattcagtgagatattccagtaaaatattaacagcctgg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2359 atgttgaaaggagccagtggagattcagtgagatattccagtaaaatattaacagcctgg 2300
Query: 468 tcttcaatatgcttcaagtatggttgggtgatccatgaaaaggacacttcgccttgagac 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2299 tcttcaatatgcttcaagtatggttgggtgatccatgaaaaggacacttcgccttgagac 2240
Query: 528 tcgtcagcttcagggaattcgattgtcttttccttcatctcagttaatgattgcggtatt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2239 tcgtcagcttcagggaattcgattgtcttttccttcatctcagttaatgattgcggtatt 2180
Query: 588 tgagaagccggggtatcaataaaaggtctctttctctcattcgcagtaaattctggaagc 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2179 tgagaagccggggtatcaataaaaggtctctttctctcattcgcagtaaattctggaagc 2120
Query: 648 tgtttatcaaaaatttccatcaattcgatcaattcttctgaaggaatgttaccagtgata 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2119 tgtttatcaaaaatttccatcaattcgatcaattcttctgaaggaatgttaccagtgata 2060
Query: 708 atcacacagcaattatctggtgtatacatttgtttatgaaattctctaatttcatcgttc 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2059 atcacacagcaattatctggtgtatacatttgtttatgaaattctctaatttcatcgttc 2000
Query: 768 gtcaacacacgtaaatttggtgttaaaccaccagtctcggaccggtatccactaccttct 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1999 gtcaacacacgtaaatttggtgttaaaccaccagtctcggaccggtatccactaccttct 1940
Query: 828 ggnaaacaatagtcttgttttttctagtgttgngataaaacatgatt 874
|| ||||||||||||| |||||||||||||| |||||| |||||||
Sbjct: 1939 gg-aaacaatagtctttgtttttctagtgttgtgataaaccatgatt 1894
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7222
Number of Sequences: 1807
Number of extensions: 7222
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 874
length of database: 10,358,551
effective HSP length: 16
effective length of query: 858
effective length of database: 10,329,639
effective search space: 8862830262
effective search space used: 8862830262
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)