BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC31ZB08FM1.SCF screened BAC_end (910 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1784 1227 0.0 >3x_Contig1784 Length = 28126 Score = 1227 bits (619), Expect = 0.0 Identities = 765/803 (95%), Gaps = 8/803 (0%) Strand = Plus / Minus Query: 88 atcggtgattccgcgatggaaggtgtattctctgttggattatttgtaattgccagggca 147 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 26657 atcggtgattccgcgatggaaggtgtattctctgttggattatttgtaattgccagggca 26598 Query: 148 ttgctggagccagatcatgaattgaacacctatctatctctattcatccgtgatgaagtt 207 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 26597 ttgctggagccagatcatgaattgaacacctatctatctctattcatccgtgatgaagtt 26538 Query: 208 atttcatggtacagtagcatgaaccgttctattgttgaagatcctcacttatatgccatt 267 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 26537 atttcatggtacagtagcatgaaccgttctattgttgaagatcctcacttatatgccatt 26478 Query: 268 gttctgacgaacgttgacttgattataagaaaggtggcccaatttggacatatgagttct 327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 26477 gttctgacgaacgttgacttgattataagaaaggtggcccaatttggacatatgagttct 26418 Query: 328 tctccaagtgtagcaactcagtatgtgttagatgctatcagtgctgctgtgagtcctaga 387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 26417 tctccaagtgtagcaactcagtatgtgttagatgctatcagtgctgctgtgagtcctaga 26358 Query: 388 aatttggcgaagtgtgatcaaagtttcatggcatggttatgagatgaacagttcatgatg 447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 26357 aatttggcgaagtgtgatcaaagtttcatggcatggttatgagatgaacagttcatgatg 26298 Query: 448 atattatatccgatgtaaaattaaatttgtatactagttaaaaaaaaatgtaaaaataat 507 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 26297 atattatatccgatgtaaaattaaatttgtatactagttaaaaaaaaatgtaaaaataat 26238 Query: 508 gtatcgatattactaacatgattcaatcattactctacaggttttcacaagttaattgca 567 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 26237 gtatcgatattactaacatgattcaatcattactctacaggttttcacaagttaattgca 26178 Query: 568 tttttagtcaagatttcctttcaatatacccttgttatgatcgttataatggccatattt 627 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || Sbjct: 26177 tttttagtcaagatttccttccaatatacccttgttatgatcgttataatggccata-tt 26119 Query: 628 tttctgttaactgggtactaagaggaagtttttcaagggactccttcttgag-cacatga 686 |||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||| Sbjct: 26118 tttctgttaactgggtactaagaggaggtttttcaggggactccttcttgagccacatga 26059 Query: 687 tcgctttttgccaatctaaattcagcctttggttcaaaagataaattaaacct-tgccaa 745 |||||| |||||||| |||||||||||||| |||||||||||||||| || ||| || Sbjct: 26058 cggcttttgcccaatctagattcagcctttggtacaaaagataaattaaaactatgcaaa 25999 Query: 746 aaagctcaaatttggatgtaccaaaccca-cagttcttggggatgtccatt-tttttgtc 803 ||||||||||| |||||||| |||| ||| |||| |||| | || ||||| ||| |||| Sbjct: 25998 aaagctcaaatatggatgtaacaaaaccagcagtacttgtgagtg-ccattctttctgtc 25940 Query: 804 ccataaacgggggcggatccttgagatatcccaaatttggtaccctgaaccttacccccc 863 ||| ||| | ||||||||||||||||| || ||||||| |||| |||| | ||||| || Sbjct: 25939 acatcaactgtggcggatccttgagatagccaaaatttgataccatgaa-cataccctcc 25881 Query: 864 actgt-atattaaaaattccaag 885 ||||| |||| |||||||||||| Sbjct: 25880 actgtaatataaaaaattccaag 25858 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7560 Number of Sequences: 1807 Number of extensions: 7560 Number of successful extensions: 56 Number of sequences better than 1.0e-20: 1 length of query: 910 length of database: 10,358,551 effective HSP length: 16 effective length of query: 894 effective length of database: 10,329,639 effective search space: 9234697266 effective search space used: 9234697266 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)