BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZB08FM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1784 1227 0.0
>3x_Contig1784
Length = 28126
Score = 1227 bits (619), Expect = 0.0
Identities = 765/803 (95%), Gaps = 8/803 (0%)
Strand = Plus / Minus
Query: 88 atcggtgattccgcgatggaaggtgtattctctgttggattatttgtaattgccagggca 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26657 atcggtgattccgcgatggaaggtgtattctctgttggattatttgtaattgccagggca 26598
Query: 148 ttgctggagccagatcatgaattgaacacctatctatctctattcatccgtgatgaagtt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26597 ttgctggagccagatcatgaattgaacacctatctatctctattcatccgtgatgaagtt 26538
Query: 208 atttcatggtacagtagcatgaaccgttctattgttgaagatcctcacttatatgccatt 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26537 atttcatggtacagtagcatgaaccgttctattgttgaagatcctcacttatatgccatt 26478
Query: 268 gttctgacgaacgttgacttgattataagaaaggtggcccaatttggacatatgagttct 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26477 gttctgacgaacgttgacttgattataagaaaggtggcccaatttggacatatgagttct 26418
Query: 328 tctccaagtgtagcaactcagtatgtgttagatgctatcagtgctgctgtgagtcctaga 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26417 tctccaagtgtagcaactcagtatgtgttagatgctatcagtgctgctgtgagtcctaga 26358
Query: 388 aatttggcgaagtgtgatcaaagtttcatggcatggttatgagatgaacagttcatgatg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26357 aatttggcgaagtgtgatcaaagtttcatggcatggttatgagatgaacagttcatgatg 26298
Query: 448 atattatatccgatgtaaaattaaatttgtatactagttaaaaaaaaatgtaaaaataat 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26297 atattatatccgatgtaaaattaaatttgtatactagttaaaaaaaaatgtaaaaataat 26238
Query: 508 gtatcgatattactaacatgattcaatcattactctacaggttttcacaagttaattgca 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26237 gtatcgatattactaacatgattcaatcattactctacaggttttcacaagttaattgca 26178
Query: 568 tttttagtcaagatttcctttcaatatacccttgttatgatcgttataatggccatattt 627
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 26177 tttttagtcaagatttccttccaatatacccttgttatgatcgttataatggccata-tt 26119
Query: 628 tttctgttaactgggtactaagaggaagtttttcaagggactccttcttgag-cacatga 686
|||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||
Sbjct: 26118 tttctgttaactgggtactaagaggaggtttttcaggggactccttcttgagccacatga 26059
Query: 687 tcgctttttgccaatctaaattcagcctttggttcaaaagataaattaaacct-tgccaa 745
|||||| |||||||| |||||||||||||| |||||||||||||||| || ||| ||
Sbjct: 26058 cggcttttgcccaatctagattcagcctttggtacaaaagataaattaaaactatgcaaa 25999
Query: 746 aaagctcaaatttggatgtaccaaaccca-cagttcttggggatgtccatt-tttttgtc 803
||||||||||| |||||||| |||| ||| |||| |||| | || ||||| ||| ||||
Sbjct: 25998 aaagctcaaatatggatgtaacaaaaccagcagtacttgtgagtg-ccattctttctgtc 25940
Query: 804 ccataaacgggggcggatccttgagatatcccaaatttggtaccctgaaccttacccccc 863
||| ||| | ||||||||||||||||| || ||||||| |||| |||| | ||||| ||
Sbjct: 25939 acatcaactgtggcggatccttgagatagccaaaatttgataccatgaa-cataccctcc 25881
Query: 864 actgt-atattaaaaattccaag 885
||||| |||| ||||||||||||
Sbjct: 25880 actgtaatataaaaaattccaag 25858
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7560
Number of Sequences: 1807
Number of extensions: 7560
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)