BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC31ZB08RM1.SCF screened BAC_end
         (901 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1375                                                        1463   0.0  

>3x_Contig1375 
          Length = 6996

 Score = 1463 bits (738), Expect = 0.0
 Identities = 813/829 (98%), Gaps = 7/829 (0%)
 Strand = Plus / Minus

                                                                        
Query: 52   cttattatccaatttacaggatgtttttgttattcttttccattctgacgaggtcgctga 111
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4696 cttattatccaatttacaggatgtttttgttattcttttccattctgacgaggtcgctga 4637

                                                                        
Query: 112  ttctgttagactatctgtgatatccttgatcgttgaacacattccattaaaggatgtttt 171
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4636 ttctgttagactatctgtgatatccttgatcgttgaacacattccattaaaggatgtttt 4577

                                                                        
Query: 172  caaaacactgcagaaagtatggacaaatgatgtatcaagttcaaataattcagttgctgt 231
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4576 caaaacactgcagaaagtatggacaaatgatgtatcaagttcaaataattcagttgctgt 4517

                                                                        
Query: 232  atccttatttttgtctatgttagaatctgctgttgaagctattgataagaagtcggcaac 291
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4516 atccttatttttgtctatgttagaatctgctgttgaagctattgataagaagtcggcaac 4457

                                                                        
Query: 292  gcaacaatctcctgttttcttcagattattgttgaacttgtttgaatacagatctatttg 351
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4456 gcaacaatctcctgttttcttcagattattgttgaacttgtttgaatacagatctatttg 4397

                                                                        
Query: 352  taccttcgatgagaattcaatcaaccgtattgaggcttctgtccatcaaattgctaatgt 411
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4396 taccttcgatgagaattcaatcaaccgtattgaggcttctgtccatcaaattgctaatgt 4337

                                                                        
Query: 412  atatgtccttaagttgaacgataaggttttcagacctctatttgctttggtagtaaattg 471
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4336 atatgtccttaagttgaacgataaggttttcagacctctatttgctttggtagtaaattg 4277

                                                                        
Query: 472  ggccttcaatggtgaaggagttacaaacacaaacatgtcgaaagaagaaaggctaatggc 531
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4276 ggccttcaatggtgaaggagttacaaacacaaacatgtcgaaagaagaaaggctaatggc 4217

                                                                        
Query: 532  attctataagttctacaacaagacacaagataacttgaagtcgatcatcacatcttattt 591
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 4216 attctataagttctacaacaagacacaagaaaacttgaagtcgatcatcacatcttattt 4157

                                                                        
Query: 592  cacctacctcttggaaccaaccaacaatctactgaaacaattcatctcgaaggagaccgt 651
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4156 cacctacctcttggaaccaaccaacaatctactgaaacaattcatctcgaaggagaccgt 4097

                                                                        
Query: 652  taatgtgagccttcgtcgtttggttttgattttcttgacatcttctttc-aatatgatag 710
            |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 4096 taatgtgagccttcgtcgtttggttttgatttccttgacatcttctttcaaatatgatag 4037

                                                                        
Query: 711  agatgaatattggaagtctacctcaagattcgaactgatnagtgaatctttgatt-acca 769
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 4036 agatgaatattggaagtctacctcaagattcgaactgataagtgaatctttgattaacca 3977

                                                                        
Query: 770  attgaccaatgtcgaagatgtcattggt-aatacttggtgaa-gcccttgtttcattagc 827
            |||||||||||||||||||||||||||| ||||||||||||| ||| ||| |||||||||
Sbjct: 3976 attgaccaatgtcgaagatgtcattggtaaatacttggtgaaggccattggttcattagc 3917

                                                             
Query: 828  cac-aatacct-tggtggtgatgaacattattagatc-tgagcgaccta 873
            ||| |||| || ||||| |||||||||| || ||||| |||||||||||
Sbjct: 3916 cacaaataactctggtgttgatgaacataataagatcatgagcgaccta 3868


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7590
Number of Sequences: 1807
Number of extensions: 7590
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 901
length of database: 10,358,551
effective HSP length: 16
effective length of query: 885
effective length of database: 10,329,639
effective search space: 9141730515
effective search space used: 9141730515
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)