BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZB09FM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1743 1570 0.0
>3x_Contig1743
Length = 20172
Score = 1570 bits (792), Expect = 0.0
Identities = 852/866 (98%), Gaps = 5/866 (0%)
Strand = Plus / Minus
Query: 85 tgaaaccatctgaaatattttgagtcatagatctagacactatgtacgcatctgcaccta 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19449 tgaaaccatctgaaatattttgagtcatagatctagacactatgtacgcatctgcaccta 19390
Query: 145 atctggataacaagtcaccaaccttgtttctgtcataaaattccatatcatgatgcatag 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19389 atctggataacaagtcaccaaccttgtttctgtcataaaattccatatcatgatgcatag 19330
Query: 205 tcttcttgataacgtttgatcttaatctggccacaagtctttcccctaatatcttaagga 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19329 tcttcttgataacgtttgatcttaatctggccacaagtctttcccctaatatcttaagga 19270
Query: 265 gtactactcttccaaaattagccatggttcctatcaacaaggccccaccgaataaaagga 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19269 gtactactcttccaaaattagccatggttcctatcaacaaggccccaccgaataaaagga 19210
Query: 325 aaaagtcatatagctgtatgtctcccacaattgggggaagatcatccaaagtaagacttt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19209 aaaagtcatatagctgtatgtctcccacaattgggggaagatcatccaaagtaagacttt 19150
Query: 385 tcgaatcttccaaccctccattgccgttattggtattactgccgcttagtgcattcttgg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19149 tcgaatcttccaaccctccattgccgttattggtattactgccgcttagtgcattcttgg 19090
Query: 445 tagcatctaatactaacccgatcaccttcggtactgccataccaatggtacaggagacgg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19089 tagcatctaatactaacccgatcaccttcggtactgccataccaatggtacaggagacgg 19030
Query: 505 tcaataatgacaccgccaatactagcattttccaatcatgccttgccaagtaaaacaacc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19029 tcaataatgacaccgccaatactagcattttccaatcatgccttgccaagtaaaacaacc 18970
Query: 565 gtttaacatcagctagcccaccagaaactgtagatgacggtttgttggtctttttatcaa 624
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18969 gtttaacatcagctagcccaccagaaactgtagatgacggtttgttggtctttttatcag 18910
Query: 625 gagttttgtcctcaccttcctgatgcttaccatttccccctacatcagaagcttcgttac 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18909 gagttttgtcctcaccttcctgatgcttaccatttccccctacatcagaagcttcgttac 18850
Query: 685 gattgcgtaaggtgatactaaaactncgtattccagctgaagggaacctttgattccctt 744
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 18849 gattgcgtaaggtgatactaaaactccgtattccagctgaagggaacctttgattccctt 18790
Query: 745 tcatttcaccaaaccggttcacggcatagtttaaagtccgtatactggatatgggcagtg 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18789 tcatttcaccaaaccggttcacggcatagtttaaagtccgtatactggatatgggcagtg 18730
Query: 805 acaatctatcatcaaaccggccttgtgatggataataagc-gattagatagagcaaagca 863
|||||||||||||||||| |||||||||||||||| |||| ||||||| ||||||| |
Sbjct: 18729 acaatctatcatcaaacc-gccttgtgatggataa-aagcggattagaaagagcaagcaa 18672
Query: 864 tcctcgtcctcgttctatgctgncacgtaaccccaaaaca-gtttcaacattctgcactg 922
||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 18671 tcctcgtcctcgtcctatgctgccacgtaaccccaaaacaggtttcaacattctgcactg 18612
Query: 923 acgtatttc-atatttatagcgtgca 947
||||| ||| ||||||||||||||||
Sbjct: 18611 acgtaattcaatatttatagcgtgca 18586
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5581
Number of Sequences: 1807
Number of extensions: 5581
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)