BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZB09RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig919 920 0.0
>3x_Contig919
Length = 4576
Score = 920 bits (464), Expect = 0.0
Identities = 486/492 (98%), Gaps = 1/492 (0%)
Strand = Plus / Plus
Query: 49 tttacttaatgcatcattgatattgacgaattgtgctgcatatttactgttttttgactc 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tttacttaatgcatcattgatattgacgaattgtgctgcatatttactgttttttgactc 570
Query: 109 gactttgaaagcggaaccagcactcaagtacctttcaccagagcatggataaaaggcctg 168
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 571 gactttgaaagcggaaccagcactcaagtacctttaaaaagagcatggataaaaggcctg 630
Query: 169 aacaaaggtcaaattgaagatgtaagtgatcagaatgataagtctgaatacgcctgatcg 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 aacaaaggtcaaattgaagatgtaagtgatcagaatgataagtctgaatacgcctgatcg 690
Query: 229 tatgccatttttaaagaacatgatctcaaacaagagacagaggagaaaatatgcgtagga 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tatgccatttttaaagaacatgatctcaaacaagagacagaggagaaaatatgcgtagga 750
Query: 289 gaaagcaaaaaaaaacagcaccaatataat-aaaaacaaaggactcaattgaaccagaat 347
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 751 gaaagcaaaaaaaaacagcaccaatataataaaaaacaaaggactcaattgaaccagaag 810
Query: 348 ctatcaagcaagaagcaaagaaaagttatcactttctttggaatcaattaaacttgaatt 407
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 ctagcaagcaagaagcaaagaaaagttatcactttctttggaatcaattaaacttgaatt 870
Query: 408 attaaaaagagaattcaaatgaattggaagcagcggaaggcagataaagatggattatgc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 attaaaaagagaattcaaatgaattggaagcagcggaaggcagataaagatggattatgc 930
Query: 468 aaaagaaaatttcctgatcactctaccagaccaaaatatcaaaacagcagaatatctaga 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 aaaagaaaatttcctgatcactctaccagaccaaaatatcaaaacagcagaatatctaga 990
Query: 528 aaaaaggtgagc 539
||||||||||||
Sbjct: 991 aaaaaggtgagc 1002
Score = 434 bits (219), Expect = e-121
Identities = 294/311 (94%), Gaps = 7/311 (2%)
Strand = Plus / Plus
Query: 631 tatatatattgatgtatctaaatagcggttntacagatctttttttctttaaaggacgaa 690
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1094 tatatatattgatgtatctaaatagcggttttacagatctttttttctttaaaggacgaa 1153
Query: 691 aatctcaggtttagtatcattacccanagaagtaatgataatacctgaatgaggtttacg 750
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 1154 aatctcaggtttagtatcattacccaaagaagtaatgaaaatacctgaatgaggtttacg 1213
Query: 751 tgaatttaagaat-agctggacccaanagacagacatatgacgcttttgagggcccaaat 809
||||||||||||| |||||||||||| ||||||||| |||||||||| |||||||||||
Sbjct: 1214 tgaatttaagaataagctggacccaaaagacagacaaatgacgctttgaagggcccaaat 1273
Query: 810 atacagttgttgggataaatcatgagacgaggtctcacttcgtttcttggtcgtaat-ca 868
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 1274 atacagttg-tgggataaatcatgagacgaggtctcactcggtttcttggtcgtaatcca 1332
Query: 869 gcctgatgtgtg-tatccctgctc-acacagaaac-atgacatgggtgagtaccgnccag 925
|||||||||||| ||||||||||| |||||||||| ||||||||||||||||||| ||||
Sbjct: 1333 gcctgatgtgtgttatccctgctcaacacagaaacaatgacatgggtgagtaccgtccag 1392
Query: 926 t-catttaaga 935
| |||||||||
Sbjct: 1393 tccatttaaga 1403
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8516
Number of Sequences: 1807
Number of extensions: 8516
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)