BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZB10FM1.SCF screened BAC_end
(888 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig913 1126 0.0
>3x_Contig913
Length = 2857
Score = 1126 bits (568), Expect = 0.0
Identities = 595/603 (98%), Gaps = 1/603 (0%)
Strand = Plus / Plus
Query: 87 taggaaaaaaaatcgaaactgaggtttaggaaaaagaataggaaactttgagaaacataa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2246 taggaaaaaaaatcgaaactgaggtttaggaaaaagaataggaaactttgagaaacataa 2305
Query: 147 gactaacagtgagtggtactcatcaatccaacttggctcttttgcattgcagcatacgct 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2306 gactaacagtgagtggtactcatcaatccaacttggctcttttgcattgcagcatacgct 2365
Query: 207 tcttcctttcgtttacgattgtatactgtgagatcgctaccaggaaacggcaggtttttt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2366 tcttcctttcgtttacgattgtatactgtgagatcgctaccaggaaacggcaggtttttt 2425
Query: 267 ttctctttcgtgcaatttaataccgttagcaattaatttaatttattcacatcgatattg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2426 ttctctttcgtgcaatttaataccgttagcaattaatttaatttattcacatcgatattg 2485
Query: 327 gctgaatctcactcatattatttactttcagtttgtccaaccactcaactgtctcgagat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2486 gctgaatctcactcatattatttactttcagtttgtccaaccactcaactgtctcgagat 2545
Query: 387 tgctcactttatcgctgaattttaccgatagtacatttatattacaggcattttttaggt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2546 tgctcactttatcgctgaattttaccgatagtacatttatattacaggcattttttaggt 2605
Query: 447 tttgttattcctaagtctgttgtatttggttttggtttcgtatttcttcctttgaattga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2606 tttgttattcctaagtctgttgtatttggttttggtttcgtatttcttcctttgaattga 2665
Query: 507 caaaattctaacccataattacacgatgttgagatctgctgctgtcagaaggtctttatc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2666 caaaattctaacccataattacacgatgttgagatctgctgctgtcagaaggtctttatc 2725
Query: 567 aaagggcgaaagttcttcgttactttcatatagatacaaatcttcttttgcaactgcttt 626
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2726 aaagggcgaagtttcttcgttactttcatatagatacaaatcttcttttgcaactgcttt 2785
Query: 627 gaacactgcggctagattggttactccaaaagcattnttgaataacccagtatcattagt 686
|||||||| ||||||||||| |||||||| ||||| |||||| ||||||||||||||||
Sbjct: 2786 gaacactgttgctagattggtaactccaaaggcattgttgaat-acccagtatcattagt 2844
Query: 687 atc 689
|||
Sbjct: 2845 atc 2847
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7626
Number of Sequences: 1807
Number of extensions: 7626
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 888
length of database: 10,358,551
effective HSP length: 16
effective length of query: 872
effective length of database: 10,329,639
effective search space: 9007445208
effective search space used: 9007445208
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)