BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZB10RM1.SCF screened BAC_end
(883 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1510 1267 0.0
>3x_Contig1510
Length = 10278
Score = 1267 bits (639), Expect = 0.0
Identities = 715/730 (97%), Gaps = 8/730 (1%)
Strand = Plus / Minus
Query: 40 atcaactgaggatccagtaaaaaagtgtctatttcgaggaccgtgattcgctgctatttg 99
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4016 atcaactgaggatccagtaaaaaagtgtctatttcgaggaccgtgattcgctgctatttg 3957
Query: 100 aattaacctttctattctccttcttttctttgatcgttcacttagttaaatgagtggtta 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3956 aattaacctttctattctccttcttttctttgatcgttcacttagttaaatgagtggtta 3897
Query: 160 aagttaaaatgtcaacgaaatagggcatataaaagagagagagagagaaatgtatgtaag 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3896 aagttaaaatgtcaacgaaatagggcatataaaagagagagagagagaaatgtatgtaag 3837
Query: 220 tatacaacgggtacaggatacatatatgcgaacgaagtagaaatgatatcaaataataaa 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3836 tatacaacgggtacaggatacatatatgcgaacgaagtagaaatgatatcaaataataaa 3777
Query: 280 aagtaaaacaacaagtatatgaggcgtttcaatcggtagttggtgacctttccctgtccc 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3776 aagtaaaacaacaagtatatgaggcgtttcaatcggtagttggtgacctttccctgtccc 3717
Query: 340 cttcctcttcgtcgtcatcttcatctgaaaacaaatgattcggcgattcagaactacctc 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3716 cttcctcttcgtcgtcatcttcatctgaaaacaaatgattcggcgattcagaactacctc 3657
Query: 400 tatgcagttcaggatcactatcactagttggagattcaacctcttcaccagtgtagtctt 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3656 tatgcagttcaggatcactatcactagttggagattcaacctcttcaccagtgtagtctt 3597
Query: 460 tcgcgaattgagttactggggatctacccgaaatccttttacttcttctaacgctttcat 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3596 tcgcgaattgagttactggggatctacccgaaatccttttacttcttctaacgctttcat 3537
Query: 520 gacccatgggtccaataagttttgaatacaacttctttccaagtgtcttttt-agaagca 578
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 3536 gacccatgggtccaataagttttgaatacaacttctttccaagtgtctttttaagaagca 3477
Query: 579 tttctctaacttcgaaatacaagtcctttgatgcgacgttgacagattcttggttcttct 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3476 tttctctaacttcgaaatacaagtcctttgatgcgacgttgacagattcttggttcttct 3417
Query: 639 tg-aatacgatctgaaatcttgaatttgtttctttgaatttcaattcgttctttcttcac 697
|| |||||||||||||||||||||| |||||| ||||||| |||||||||| |||||||
Sbjct: 3416 tgaaatacgatctgaaatcttgaatatgtttc-ttgaattccaattcgttc-ttcttcaa 3359
Query: 698 caaggatacgttcaactcctgttctcg-ggcacctntttgcgaaattcctcattcaagta 756
| | ||||||||||||||||| ||||| ||||||| |||||||||| |||| |||||||
Sbjct: 3358 ccaagatacgttcaactcctg-tctcgtggcacctc-ttgcgaaatttctca-tcaagta 3302
Query: 757 cttgtcatag 766
||||||||||
Sbjct: 3301 cttgtcatag 3292
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8200
Number of Sequences: 1807
Number of extensions: 8200
Number of successful extensions: 187
Number of sequences better than 1.0e-20: 1
length of query: 883
length of database: 10,358,551
effective HSP length: 16
effective length of query: 867
effective length of database: 10,329,639
effective search space: 8955797013
effective search space used: 8955797013
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)