BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZB11FM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1448 1285 0.0
>3x_Contig1448
Length = 10333
Score = 1285 bits (648), Expect = 0.0
Identities = 715/732 (97%), Gaps = 4/732 (0%)
Strand = Plus / Plus
Query: 94 cgcgaatgcgatgaacgcacctttgacaaagttttgggccataataacgcaggaccaata 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8225 cgcgaatgcgatgaacgcacctttgacaaagttttgggccataataacgcaggaccaata 8284
Query: 154 ataataattggcggaaaacatattatagaagaaaccgtatttgttcaagaccctctggtc 213
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 8285 ataataattggcggaaaacatagtatagaagaaaccgtatttgttcaagaccctctggtc 8344
Query: 214 accatattaa-tagtagctggattgttgtgtaactgaatagatcgtttagcaaaagaaat 272
||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8345 accatataaaatagcagctggattgttgtgtaactgaatagatcgtttagcaaaagaaat 8404
Query: 273 tgttctgagtgacacataaccgaggataccataaaccataatgatgaatagacaactcaa 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8405 tgttctgagtgacacataaccgaggataccataaaccataatgatgaatagacaactcaa 8464
Query: 333 tacaatgagagccggcgaatctctttgaataaattcccagaaacataaaatagtaatttg 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8465 tacaatgagagccggcgaatctctttgaataaattcccagaaacataaaatagtaatttg 8524
Query: 393 aatgaaaccaatgtaaatgtaacgcagaagagcacccttcaatatgatcttccaatgctt 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8525 aatgaaaccaatgtaaatgtaacgcagaagagcacccttcaatatgatcttccaatgctt 8584
Query: 453 tctgaaatcgatgaacctcgagtttttcaaccatccggctctgatacatagttcgacgac 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8585 tctgaaatcgatgaacctcgagtttttcaaccatccggctctgatacatagttcgacgac 8644
Query: 513 atatttggcgcaaatgatcaacccaaataggaaatacccacataatataaagaatgttaa 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8645 atatttggcgcaaatgatcaacccaaataggaaatacccacataatataaagaatgttaa 8704
Query: 573 cccagtagcaacgatagaagtaatttcgatgttggcactgtaacctaaacgtttaatacc 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8705 cccagtagcaacgatagaagtaatttcgatgttggcactgtaacctaaacgtttaatacc 8764
Query: 633 tctgaagattagaacgttggaattaccatacaagacttctgccgcacgcttatagatgcg 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8765 tctgaagattagaacgttggaattaccatacaagacttctgccgcacgcttatagatgcg 8824
Query: 693 ggtacttttcagatattcttagggatctttgaaccaaaaccagaattgtctttgaagttt 752
|||||||| ||||||||| ||||||||||||||||||||| |||||||||||| |||
Sbjct: 8825 ggtactttccagatattc-tagggatctttgaaccaaaacagaaattgtctttgaggtta 8883
Query: 753 agtatagagtcggagtgccaccaggggccttgaa-ataccatttgaaaattttttgcttg 811
|||||||||||||||||||||||| || |||||| ||||||| |||||||||||||| ||
Sbjct: 8884 agtatagagtcggagtgccaccagtgg-cttgaacataccatctgaaaattttttgcatg 8942
Query: 812 aaagggacacgg 823
|||| |||||||
Sbjct: 8943 aaagtgacacgg 8954
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6849
Number of Sequences: 1807
Number of extensions: 6849
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)