BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZB11RM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1448 1251 0.0
>3x_Contig1448
Length = 10333
Score = 1251 bits (631), Expect = 0.0
Identities = 711/731 (97%), Gaps = 5/731 (0%)
Strand = Plus / Minus
Query: 46 ctttcttttctaatgggaagatagtctcgcaaacgggtgtcaaatgggccactgctgtta 105
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 9213 ctttcttttctaatgggaagacagtctcgcaaacgggtgtcaaatgggccactgctgtta 9154
Query: 106 tcgctggtatcgggttgttgacttctgcattgctatccgccttcggtaactctaacgctg 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9153 tcgctggtatcgggttgttgacttctgcattgctatccgccttcggtaactctaacgctg 9094
Query: 166 cttcacatgtggctgccaatactatgtcgcttttcttgtatttccaatctgtgactgtgt 225
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 9093 cttcacatgtggctgccaatactatgtcgcttttcttgtatttccaatcggtgactgtgt 9034
Query: 226 tcgccatggaacatgttaacactgtgcctcctatcgccgctgcttggtccgaaaacttga 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9033 tcgccatggaacatgttaacactgtgcctcctatcgccgctgcttggtccgaaaacttga 8974
Query: 286 tgtggtccatgggattgatccgtgtcactttcatgcaaaaaattttcagatggtatgttc 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8973 tgtggtccatgggattgatccgtgtcactttcatgcaaaaaattttcagatggtatgttc 8914
Query: 346 aagccactggtggcactccgactctatacttaacctcaaagacaatttctgttttggttc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8913 aagccactggtggcactccgactctatacttaacctcaaagacaatttctgttttggttc 8854
Query: 406 aaagatccctagaatatctggaaagtacccgcatctataagcgtgcggcagaagtcttgt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8853 aaagatccctagaatatctggaaagtacccgcatctataagcgtgcggcagaagtcttgt 8794
Query: 466 atggtaattccaacgttctaatcttcagaggtattaaacgtttaggttacagtgccaaca 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8793 atggtaattccaacgttctaatcttcagaggtattaaacgtttaggttacagtgccaaca 8734
Query: 526 tcgaaattacttctatcgttgctactgggttaacattctttatattatgtgggtatttcc 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8733 tcgaaattacttctatcgttgctactgggttaacattctttatattatgtgggtatttcc 8674
Query: 586 tatttgggttgatcatttgcgccaaatatgtcgtcgaactatgtatcagagccggatggt 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8673 tatttgggttgatcatttgcgccaaatatgtcgtcgaactatgtatcagagccggatggt 8614
Query: 646 tggaaaacttcaagttcatcgattttcaaaagcattggaagatcatattgaaagggtgcc 705
|| |||||| | |||||||||||| |||||||||||||||||||||| ||||||| |
Sbjct: 8613 tgaaaaactcgaggttcatcgatttcagaaagcattggaagatcatattg-aagggtg-c 8556
Query: 706 ttttttgcgttacctttaccattggtttcattccaattaccatttttatgtttctgggga 765
| || |||||||| |||| |||||||||||||| |||||| | |||||||||||| ||||
Sbjct: 8555 tcttctgcgttacattta-cattggtttcattcaaattacta-ttttatgtttct-ggga 8499
Query: 766 attaattcaaa 776
||| |||||||
Sbjct: 8498 atttattcaaa 8488
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6349
Number of Sequences: 1807
Number of extensions: 6349
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)