BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZB12FM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1523 1035 0.0
>3x_Contig1523
Length = 10049
Score = 1035 bits (522), Expect = 0.0
Identities = 538/542 (99%), Gaps = 1/542 (0%)
Strand = Plus / Minus
Query: 88 ataaatatatgcaatgaagggtagcccgataattaaattagacgtgcaatccgccttgat 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ataaatatatgcaatgaagggtagcccgataattaaattagacgtgcaatccgccttgat 482
Query: 148 gcatattggttttgagactcctcgtcgaaagggagaattttttaaatgaaaagaagatcc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gcatattggttttgagactcctcgtcgaaagggagaattttttaaatgaaaagaagatcc 422
Query: 208 ggcttcgtttatatttcatcgtcagaagagacgtaagcatcacctaattccttcttcttc 267
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ggcttcgtttagaattcatcgtcagaagagacgtaagcatcacctaattccttcttcttc 362
Query: 268 ttcattctttccttcttcttctttctcaattccgcagaagacaacttattcttcttctta 327
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 361 ttcattctttccttcttcttctttctcaattccgcagaagacaacttagtcttcttctta 302
Query: 328 gcggaagcgatcttgttacccatagcatcgaacttgtcttcttcatcttccttcttttcg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gcggaagcgatcttgttacccatagcatcgaacttgtcttcttcatcttccttcttttcg 242
Query: 388 attcttggaccggaaccttgaccggtaacccagttatgaccagatggagtcattctacca 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 attcttggaccggaaccttgaccggtaacccagttatgaccagatggagtcattctacca 182
Query: 448 tccttgacagcccagacttcttcagtcaaattcttggtgaattcagcagagtgagtaatg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tccttgacagcccagacttcttcagtcaaattcttggtgaattcagcagagtgagtaatg 122
Query: 508 atgataacaccaccttcgaaagccttcaaagccttggacaaagcacctagagagtctctg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atgataacaccaccttcgaaagccttcaaagccttggacaaagcacctagagagtctctg 62
Query: 568 tccaaatagttggtaggttcatccaagacgatcaagtggggtctttgccaggtacaagca 627
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 61 tccaaatagttggtaggttcatccaagacgatcaagt-gggtctttgccaggtacaagca 3
Query: 628 gc 629
||
Sbjct: 2 gc 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9798
Number of Sequences: 1807
Number of extensions: 9798
Number of successful extensions: 109
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)