BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZB12RM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig641 1318 0.0
>3x_Contig641
Length = 2317
Score = 1318 bits (665), Expect = 0.0
Identities = 781/808 (96%), Gaps = 9/808 (1%)
Strand = Plus / Minus
Query: 43 gcttctggttcaattcatttcttttggtcttgttactggggcttttaccagcctgctagc 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1675 gcttctggttcaattcatttcttttggtcttgttactggggcttttaccagcctgctagc 1616
Query: 103 tgtttttctgtaggcaaaactgtaaggggcacgtgaaatacgaaatcgtatccctccatg 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1615 tgtttttctgtaggcaaaactgtaaggggcacgtgaaatacgaaatcgtatccctccatg 1556
Query: 163 tctcttttggcatggtatagggtaccttttcggtcctcataggttttactcattgatatt 222
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1555 tctcttttggcatggtatagggtaccttttcggtcctcataggttttactcaatgatatt 1496
Query: 223 tcagtgttttgctcagctaatggaatcatgacaaatttaaatgttagcatccatttaagt 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1495 tcagtgttttgctcagctaatggaatcatgacaaatttaaatgttagcatccatttaagt 1436
Query: 283 tgaaatatgtttgttttaaattgactagtaatgtaagtcgtgggagagcattgaggaata 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1435 tgaaatatgtttgttttaaattgactagtaatgtaagtcgtgggagagcattgaggaata 1376
Query: 343 agtttcatgcaaatcttatcgcaattatcgaaatttgtagcgtgagtttcgtagactaaa 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1375 agtttcatgcaaatcttatcgcaattatcgaaatttgtagcgtgagtttcgtagactaaa 1316
Query: 403 gttcccgaaggcttcttctttgagatattttcatctgacgagaattttggattaatcaac 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1315 gttcccgaaggcttcttctttgagatattttcatctgacgagaattttggattaatcaac 1256
Query: 463 tcaaatgtttcgatggatgctgtcacagcagtcactttaaaattggaattatcttctaca 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1255 tcaaatgtttcgatggatgctgtcacagcagtcactttaaaattggaattatcttctaca 1196
Query: 523 tttttcaagtcaagtattatatcgatttgatcggaaacagagtacgctggtttggagagt 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1195 tttttcaagtcaagtattatatcgatttgatcggaaacagagtacgctggtttggagagt 1136
Query: 583 tctaaa-tacaaatgaacttatcattcatttttac-acatactcagnttgtaatgacctg 640
|||||| |||||||||||||||||||||||||||| |||||||||| ||||||||| |||
Sbjct: 1135 tctaaattacaaatgaacttatcattcatttttacaacatactcagtttgtaatga-ctg 1077
Query: 641 c-actgcgatagtagcgaagaattgctttgcgtctcatcaatagagttctctgggatacc 699
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1076 caactgcgatagtagcgaagaattgctttgcgtctcatcaatagagttctctgggatacc 1017
Query: 700 tgtaaaat-aaattgcgacaaagtcattc-gactgaggttgagggttctgtttcaaattg 757
|||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 1016 tgtaaaataaaattgcgacaagttcattcggactgaggttgagggttctgtttcaaattg 957
Query: 758 ttgccct-ataatgaatcatggggtccggccggaatcatatttttaatttctttctgaaa 816
||| ||| ||||||||||| |||| | | ||||||||| |||| ||| | |||||| |
Sbjct: 956 ttggcctaataatgaatcaatgggtac-gtcggaatcatcattttcattccattctgaga 898
Query: 817 ctacgcccttaaaactttggtttcatgg 844
||||| ||| ||||||| |||||||||
Sbjct: 897 ctacg-tctttaaacttttgtttcatgg 871
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7409
Number of Sequences: 1807
Number of extensions: 7409
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)