BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZC01RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig521 884 0.0
>3x_Contig521
Length = 2327
Score = 884 bits (446), Expect = 0.0
Identities = 538/561 (95%), Gaps = 6/561 (1%)
Strand = Plus / Plus
Query: 254 gtagcagacttagcacctcttggaacagcaaaggtcaatggagtcaaaacgacttgacct 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtagcagacttagcacctcttggaacagcaaaggtcaatggagtcaaaacgacttgacct 60
Query: 314 aagttgatagcttgtcttgggacaccagtggttggaccatcaatcaaagcctggaaggaa 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aagttgatagcttgtcttgggacaccagtggttggaccatcaatcaaagcctggaaggaa 120
Query: 374 attaaaattagacaagttaatgtcatggatattttgttagtaaaaattgttcgatacgag 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attaaaattagacaagttaatgtcatggatattttgttagtaaaaattgttcgatacgag 180
Query: 434 tttatggatagaaacaaaaaaataactaggaaaaggactgtcatgttcataccaagtacg 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tttatggatagaaacaaaaaaataactaggaaaaggactgtcatgttcataccaagtacg 240
Query: 494 agagccatcgagtattaacgacacattcctaaccttaccagaaggagggaaaacaaacgt 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agagccatcgagtattaacgacacattcctaaccttaccagaaggagggaaaacaaacgt 300
Query: 554 agtctaaacctctctctcgatgtctgttcagtacaatagtttttcattcatttctcaaag 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agtctaaacctctctctcgatgtctgttcagtacaatagtttttcattcatttctcaaag 360
Query: 614 tatactttcttttactcggggaacagtttatcatgaatcatttctttctcttgctcatat 673
|||||||||||| ||||||| ||||||||||||||||||||| || ||||| |||||||
Sbjct: 361 tatactttctttaactcgggaaacagtttatcatgaatcattctttcctcttcctcatat 420
Query: 674 tattcntcggttcgatcctatacatctatgcaactttccccaataaagccttatgaatac 733
||||| |||||||||||||||||||||||||||||||||| ||||||| | || ||||||
Sbjct: 421 tattcttcggttcgatcctatacatctatgcaactttcccaaataaag-cataagaatac 479
Query: 734 cagatcgcagtggggatcgattttcggttctttattttcaatggaaaggatggtacggga 793
||||||||||| | |||||| | || |||| |||||| |||||||| |||||||| | |
Sbjct: 480 cagatcgcagt-gtgatcga-tatctgttc-ttatttcaaatggaaa-gatggtactgta 535
Query: 794 cagggaattctccgtttcatt 814
||||||| |||||||||||||
Sbjct: 536 cagggaa-tctccgtttcatt 555
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7771
Number of Sequences: 1807
Number of extensions: 7771
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)