BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZC02RM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1442 1334 0.0
>3x_Contig1442
Length = 8270
Score = 1334 bits (673), Expect = 0.0
Identities = 764/783 (97%), Gaps = 11/783 (1%)
Strand = Plus / Minus
Query: 41 cttgtaacaaacgatcgtctccagatcaattgagctataactctttcaccactatgaaga 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5242 cttgtaacaaacgatcgtctccagatcaattgagctataactctttcaccactatgaaga 5183
Query: 101 aaaat-acataaaaaaaccgtgaacctgaacaggaactttcaaaagtgcgttcttagtga 159
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5182 aaaatcacataaaaaaaccgtgaacctgaacaggaactttcaaaagtgcgttcttagtga 5123
Query: 160 aaagaaaaaaacaccaaatgtatcttcactggctcctgaacaacaccttatatttcaaaa 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5122 aaagaaaaaaacaccaaatgtatcttcactggctcctgaacaacaccttatatttcaaaa 5063
Query: 220 caataaagtcatctcatgaccatctattcgtaaaccaactgctcttctcttacttttacg 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5062 caataaagtcatctcatgaccatctattcgtaaaccaactgctcttctcttacttttacg 5003
Query: 280 tatgttgagcctttccgatttctcaacatcccaacaaattcgcaaaaaccatgcgatgct 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5002 tatgttgagcctttccgatttctcaacatcccaacaaattcgcaaaaaccatgcgatgct 4943
Query: 340 gaagagggaaatggtgttacccgaccattacgttatcatgagtagacacgtgaccgtaaa 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4942 gaagagggaaatggtgttacccgaccattacgttatcatgagtagacacgtgaccgtaaa 4883
Query: 400 gatctttaggtgtcctcgctaaggtgatgatcggtatcacctggtgttcggtaccgctca 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4882 gatctttaggtgtcctcgctaaggtgatgatcggtatcacctggtgttcggtaccgctca 4823
Query: 460 gtggttgtatttggtgttgggatgatcgtatctccaaagcctgttgtggaaggagtagtt 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4822 gtggttgtatttggtgttgggatgatcgtatctccaaagcctgttgtggaaggagtagtt 4763
Query: 520 ggagggattgttgtagcttctgttgggttttgttgttgcggttgatgatgatggtggtga 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4762 ggagggattgttgtagcttctgttgggttttgttgttgcggttgatgatgatggtggtga 4703
Query: 580 tgatgggtattctgatgttctggatccgtgtctgattcagaagcgtctctggtaggcgtt 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4702 tgatgggtattctgatgttctggatccgtgtctgattcagaagcgtctctggtaggcgtt 4643
Query: 640 tgaactcctgtactatttccagtggtgtttgttgagtttgattcttgacaccagtaccta 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4642 tgaactcctgtactatttccagtggtgtttgttgagtttgattcttgacaccagtaccta 4583
Query: 700 tgatattcccatgattttagtttggcacagtctttgatcaatattttggtgcgctttaca 759
||| ||||||||||||| || ||||||||||| |||| ||||| |||||||||| |||||
Sbjct: 4582 tgaaattcccatgatttcag-ttggcacagtc-ttgagcaata-tttggtgcgc-ttaca 4527
Query: 760 cctttttacatttggnagaacctgtttttggatgatctttccatttttcccacagctgga 819
|| || ||||||||| | | ||| |||||||||||||| ||| ||||||||||||| |
Sbjct: 4526 cc-ttctacatttgg--ggaactg-ttttggatgatcttccca--tttcccacagctgaa 4473
Query: 820 att 822
|||
Sbjct: 4472 att 4470
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7769
Number of Sequences: 1807
Number of extensions: 7769
Number of successful extensions: 125
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)