BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZC03FM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1529 1594 0.0
>3x_Contig1529
Length = 11812
Score = 1594 bits (804), Expect = 0.0
Identities = 830/835 (99%), Gaps = 3/835 (0%)
Strand = Plus / Plus
Query: 86 agaaagaagagtaaggcaaaacttcttcattcaagtagtatgggtggatctgctgggtta 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 agaaagaagagtaaggcaaaacttcttcattcaagtagtatgggtggatctgctgggtta 506
Query: 146 aaacatccaaattacaaggcagtgaacaagaattcaagagttttgttgaaggaatatata 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aaacatccaaattacaaggcagtgaacaagaattcaagagttttgttgaaggaatatata 566
Query: 206 aacaaatgcaataatgcatccgcaagttgcaaaaagttagccaagagactaaaaatttca 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 aacaaatgcaataatgcatccgcaagttgcaaaaagttagccaagagactaaaaatttca 626
Query: 266 gatagagaccagctacaaagggtccttgaagagaaacacaaagatttattggagcaactg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gatagagaccagctacaaagggtccttgaagagaaacacaaagatttattggagcaactg 686
Query: 326 ccgaattttgaaactttctcctccatgttcgaagatatatggtgtccatacatgaaagaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ccgaattttgaaactttctcctccatgttcgaagatatatggtgtccatacatgaaagaa 746
Query: 386 ttgttgaacatcccagataatcacaaagttggaaatccattacctttgaactctcagcaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ttgttgaacatcccagataatcacaaagttggaaatccattacctttgaactctcagcaa 806
Query: 446 actttgatcaagctctctatggctgattataacgggtgtaagttgaaggtatctaaatcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 actttgatcaagctctctatggctgattataacgggtgtaagttgaaggtatctaaatcc 866
Query: 506 aaaaacaagtcattaactgggaaaaatggtattgtaatatgggatgctcaaaagacattc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 aaaaacaagtcattaactgggaaaaatggtattgtaatatgggatgctcaaaagacattc 926
Query: 566 ataatcataacgaaaggcggattagtcgatgaattgaaaagcataccgaagaaaggaaca 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927 ataatcataacgaaaggcggattagtcgatgaattgaaaagcataccgaagaaaggaaca 986
Query: 626 actttcgatttcgagattccaatcaatgaagaagaatctttagcctatacaattcttggt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987 actttcgatttcgagattccaatcaatgaagaagaatctttagcctatacaattcttggt 1046
Query: 686 gatagatttaaatatagaagtgttgatagagccggtagaaaatttaagagtcgccgttgc 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1047 gatagatttaaatatagaagtgttgatagagccggtagaaaatttaagagtcgccgttgc 1106
Query: 746 gatgacctattatattacattagttaacgaagtaaaatatatatgtagcagccttgctac 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1107 gatgacctattatattacattagttaacgaagtaaaatatatatgtagcagccttgctac 1166
Query: 806 tttatctgttcaatcaactatcatttagttttggcttcaaggatagnntcttatcttttt 865
||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||
Sbjct: 1167 tttatctgttcaatcaactatca-ttagttttggcttcaaggatag-ttcttatc-tttt 1223
Query: 866 gtctcgtcgtcgcatcgtcaagtgaatcactcagaagcttcttcacatcgatatt 920
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1224 gtctcgtcgtcgcatcgtcaagtgaatcactcagaagcttctccacatcgatatt 1278
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7761
Number of Sequences: 1807
Number of extensions: 7761
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)