BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZC03RM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1140 1505 0.0
>3x_Contig1140
Length = 5352
Score = 1505 bits (759), Expect = 0.0
Identities = 790/799 (98%), Gaps = 1/799 (0%)
Strand = Plus / Plus
Query: 48 atatgcagcgctgtacttttcccggagaggtttcaaagcatcaacatatttctgtttctc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 atatgcagcgctgtacttttcccggagaggtttcaaagcatcaacatatttctgtttctc 555
Query: 108 actttctgatagtgacctccactgtttccctgcaatcttcatagcgccagggttggaaac 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 actttctgatagtgacctccactgtttccctgcaatcttcatagcgccagggttggaaac 615
Query: 168 attgtgtgatgcgcaaatatgatcgtgcacttggctgaaatagtaagagaatgcagttgg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 attgtgtgatgcgcaaatatgatcgtgcacttggctgaaatagtaagagaatgcagttgg 675
Query: 228 tggtctctttggcttgactgctgcttcaagagcaattggggaaactgacaaaaagcgttt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tggtctctttggcttgactgctgcttcaagagcaattggggaaactgacaaaaagcgttt 735
Query: 288 aaatatcatagttgaatagttagtcgattccttagtagaatactttgttatacttttgaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 aaatatcatagttgaatagttagtcgattccttagtagaatactttgttatacttttgaa 795
Query: 348 gggaagtaatagaatgagtagataatatatttaagcgtttgacttgtacaagaaacttgg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 gggaagtaatagaatgagtagataatatatttaagcgtttgacttgtacaagaaacttgg 855
Query: 408 catgggtttgtattatagcggatgattgcttgtttttaattgtttgtttttgttttggaa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 catgggtttgtattatagcggatgattgcttgtttttaattgtttgtttttgttttggaa 915
Query: 468 gggtaaaaaaaaggtctcataagatggggggcgggtagcgctcgagaagatttctgattt 527
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 916 gggtaaaaaaaaggtctcataagagggggggcgggtagcgctcgagaagatttctgattt 975
Query: 528 ataagtcacgtgtatgtccgattaagggtgaaatggacttgggttatcaaaattaggtta 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976 ataagtcacgtgtatgtccgattaagggtgaaatggacttgggttatcaaaattaggtta 1035
Query: 588 caatgccattcaaattattgagatttgaactgaaatgcaatgatcatggagaaagcgtta 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1036 caatgccattcaaattattgagatttgaactgaaatgcaatgatcatggagaaagcgtta 1095
Query: 648 gacggatagcaaccgggtgatttttgtcgaccaagtacttgctaatatcgtggtataaag 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1096 gacggatagcaaccgggtgatttttgtcgaccaagtacttgctaatatcgtggtataaag 1155
Query: 708 atctgtgatggcaattgtggaatgttttatagtgatcgtttgattgcgctgcggataata 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1156 atctgtgatggcaattgtggaatgttttatagtgatcgtttgattgcgctgcggataata 1215
Query: 768 ttttgagtagagagcccttagattgatttccttaaaacgtcgtggtataccgttaagtnc 827
|||||||||||||||| ||||||||||| ||||||||||||||| ||||||| | || |
Sbjct: 1216 ttttgagtagagagcctttagattgattcccttaaaacgtcgtgtaataccgtaatgt-c 1274
Query: 828 attgttagtttactcccaa 846
|||| ||||||||||||||
Sbjct: 1275 attggtagtttactcccaa 1293
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6642
Number of Sequences: 1807
Number of extensions: 6642
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)