BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZC04FM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1318 1469 0.0
>3x_Contig1318
Length = 8566
Score = 1469 bits (741), Expect = 0.0
Identities = 787/797 (98%), Gaps = 4/797 (0%)
Strand = Plus / Minus
Query: 89 tattattaccttgcaaatattttgataggtcctgattaatgtccagcgacgttggataga 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6354 tattattaccttgcaaatattttgataggtcctgattaatgtccagcgacgttggataga 6295
Query: 149 attttttaatgttggtacctttgaggatccaagatttgatttgtattggatcctttgtag 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6294 attttttaatgttggtacctttgaggatccaagatttgatttgtattggatcctttgtag 6235
Query: 209 gtgaagtgttaaaattgaagttaaaaccattttggtgattaatgttttctttattgaaac 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6234 gtgaagtgttaaaattgaagttaaaaccattttggtgattaatgttttctttattgaaac 6175
Query: 269 tgttggagttgttgttaaag-tcataatcagtcatcgtatcattgctaccattcatccta 327
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 6174 tgttggagttgttgttaaagctcataatcagtcatcgtatcattgctaccattcatccta 6115
Query: 328 aatttgaaactgttatgagaaaaagtatttgagttagaacttgaactaggtactgaattc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6114 aatttgaaactgttatgagaaaaagtatttgagttagaacttgaactaggtactgaattc 6055
Query: 388 gaatttgaattattattagaagaaaacttcgaattgttcgatggcatgtagtgataatta 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6054 gaatttgaattattattagaagaaaacttcgaattgttcgatggcatgtagtgataatta 5995
Query: 448 ttgtttagttgatcattcaagtaatctacatcgaaatctgaatccgaatcgtccaaatca 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5994 ttgtttagttgatcattcaagtaatctacatcgaaatctgaatccgaatcgtccaaatca 5935
Query: 508 ttatccgaatcagacaacgagaattttggaattgatttcgataggggtaagttcatcttt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5934 ttatccgaatcagacaacgagaattttggaattgatttcgataggggtaagttcatcttt 5875
Query: 568 gagagttgagttccaaaccaaaaagagtcagaaggatccaagttgctaactaagtttgat 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5874 gagagttgagttccaaaccaaaaagagtcagaaggatccaagttgctaactaagtttgat 5815
Query: 628 gcgtacgaagtagatgcagacgaagctctggagtttggtgactcatgatctagtggagat 687
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5814 gcgtacgaagtagaagcagacgaagctctggagtttggtgactcatgatctagtggagat 5755
Query: 688 acttgaggagatgtttcatttgaaatcgtaacaggtttctctggaagagtcgaacctttt 747
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 5754 acttgaggagatgtttcatttgaaatcgtaacagg-ttctctggaagagtcgaacctttt 5696
Query: 748 cactttagtttagttcagaagcaaatcttaccgatttacttgaagaaatagacgattgac 807
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5695 cactttag-ttagttcagaagcaaatcttaccgatttacttgaagaaatagacgattgac 5637
Query: 808 tcgaatcagaataaagtttcaacgaggatttcaactttcttatgataagttggatgcgaa 867
||||| ||||| |||||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct: 5636 tcgaagcagaagaaagtttcaacgaggatttcaactttctcatgat-aggtggatgcgaa 5578
Query: 868 gtttgtctgttcagttt 884
|||||||||| ||||||
Sbjct: 5577 gtttgtctgtacagttt 5561
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7714
Number of Sequences: 1807
Number of extensions: 7714
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)