BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZC04RM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1622 1445 0.0
3x_Contig1722 178 1e-44
3x_Contig1486 178 1e-44
3x_Contig1636 176 5e-44
3x_Contig1727 172 8e-43
3x_Contig905 100 1e-20
>3x_Contig1622
Length = 13445
Score = 1445 bits (729), Expect = 0.0
Identities = 804/821 (97%), Gaps = 6/821 (0%)
Strand = Plus / Plus
Query: 48 ctaagcgtcacggtcatcatgaattgtcgaatgatatattactcttgtgaaactattgac 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4093 ctaagcgtcacggtcatcatgaattgtcgaatgatatattactcttgtgaaactattgac 4152
Query: 108 cacaaaacatgaccataactcaatataaatatctctccctgccagaaaatttttacagca 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4153 cacaaaacatgaccataactcaatataaatatctctccctgccagaaaatttttacagca 4212
Query: 168 tggttctttggttgtaaacattccacagaaattatgcaacatggccgagcggttaaggcg 227
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 4213 tggttctttggttgtaaacattccacagaaattaggcaacatggccgagcggttaaggcg 4272
Query: 228 aaagattagaaatcttttgggctctgcccgcgcaggttcgagtcctgctgttgtcgttat 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4273 aaagattagaaatcttttgggctctgcccgcgcaggttcgagtcctgctgttgtcgttat 4332
Query: 288 ttttttataagttagacttcttaacatttcttttcttgtacaacgtgtgttggcaacaaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4333 ttttttataagttagacttcttaacatttcttttcttgtacaacgtgtgttggcaacaaa 4392
Query: 348 tcacgctacataatatataccgcgtttgtggttcctagcagaggttttgttgaaataatt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4393 tcacgctacataatatataccgcgtttgtggttcctagcagaggttttgttgaaataatt 4452
Query: 408 caaactgcttttttaccatctgatttgggagagcattactgtgagtattagctgttaatt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4453 caaactgcttttttaccatctgatttgggagagcattactgtgagtattagctgttaatt 4512
Query: 468 gtatccgattgcacgtgtttttgacaagcgtaacattgataccccggggtagccgatttt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4513 gtatccgattgcacgtgtttttgacaagcgtaacattgataccccggggtagccgatttt 4572
Query: 528 ataaccataccagtatttcattcaataattttagatatgtctgttctacggaggactatt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4573 ataaccataccagtatttcattcaataattttagatatgtctgttctacggaggactatt 4632
Query: 588 gatccaatagcatctctgtgcactccatgcttagtaacgaacaggagtcccttcttgttg 647
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 4633 gatccaatagcatctctgtgcactccaggcttagtaacgaacaggagtcccttcttgttg 4692
Query: 648 aaactgtgtaatgtactggtcgatatattctgatt-aacatctcttcctacag-aattgg 705
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 4693 aaactgtgtaatgtactggtcgatatattctgattaaacatctcttcctacagaaattgg 4752
Query: 706 gcaacatggccgagcgtttaaggcgaaaga-tataaatcttttgggctctgcccgcgcat 764
|||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||
Sbjct: 4753 gcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcgcag 4812
Query: 765 gttcgagtcctggctgttgtcgacatttttttggtttattaaaaaacttttttggtttaa 824
||||||||||| |||||||||| ||||||||| ||||||| ||||||||||||| |||||
Sbjct: 4813 gttcgagtcct-gctgttgtcgtcattttttt-gtttatttaaaaacttttttgttttaa 4870
Query: 825 atgcagcaattgattttaaacggggttttacttatttcaaa 865
|||||||||| |||||| ||||| ||||||| |||||||||
Sbjct: 4871 atgcagcaatagatttt-aacggtgttttacatatttcaaa 4910
>3x_Contig1722
Length = 17718
Score = 178 bits (90), Expect = 1e-44
Identities = 90/90 (100%)
Strand = Plus / Minus
Query: 203 gcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcgcag 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1720 gcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcgcag 1661
Query: 263 gttcgagtcctgctgttgtcgttatttttt 292
||||||||||||||||||||||||||||||
Sbjct: 1660 gttcgagtcctgctgttgtcgttatttttt 1631
Score = 111 bits (56), Expect = 3e-24
Identities = 85/92 (92%), Gaps = 2/92 (2%)
Strand = Plus / Minus
Query: 705 ggcaacatggccgagcgtttaaggcgaaagat-ataaatcttttgggctctgcccgcgca 763
||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||
Sbjct: 1721 ggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcgca 1662
Query: 764 tgttcgagtcctggctgttgtcgacatttttt 795
||||||||||| |||||||||| |||||||
Sbjct: 1661 ggttcgagtcct-gctgttgtcgttatttttt 1631
>3x_Contig1486
Length = 12131
Score = 178 bits (90), Expect = 1e-44
Identities = 90/90 (100%)
Strand = Plus / Minus
Query: 203 gcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcgcag 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11492 gcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcgcag 11433
Query: 263 gttcgagtcctgctgttgtcgttatttttt 292
||||||||||||||||||||||||||||||
Sbjct: 11432 gttcgagtcctgctgttgtcgttatttttt 11403
Score = 111 bits (56), Expect = 3e-24
Identities = 85/92 (92%), Gaps = 2/92 (2%)
Strand = Plus / Minus
Query: 705 ggcaacatggccgagcgtttaaggcgaaagat-ataaatcttttgggctctgcccgcgca 763
||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||
Sbjct: 11493 ggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcgca 11434
Query: 764 tgttcgagtcctggctgttgtcgacatttttt 795
||||||||||| |||||||||| |||||||
Sbjct: 11433 ggttcgagtcct-gctgttgtcgttatttttt 11403
>3x_Contig1636
Length = 15667
Score = 176 bits (89), Expect = 5e-44
Identities = 89/89 (100%)
Strand = Plus / Minus
Query: 203 gcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcgcag 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6397 gcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcgcag 6338
Query: 263 gttcgagtcctgctgttgtcgttattttt 291
|||||||||||||||||||||||||||||
Sbjct: 6337 gttcgagtcctgctgttgtcgttattttt 6309
Score = 109 bits (55), Expect = 1e-23
Identities = 78/83 (93%), Gaps = 2/83 (2%)
Strand = Plus / Minus
Query: 705 ggcaacatggccgagcgtttaaggcgaaagat-ataaatcttttgggctctgcccgcgca 763
||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||
Sbjct: 6398 ggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcgca 6339
Query: 764 tgttcgagtcctggctgttgtcg 786
||||||||||| ||||||||||
Sbjct: 6338 ggttcgagtcct-gctgttgtcg 6317
>3x_Contig1727
Length = 17872
Score = 172 bits (87), Expect = 8e-43
Identities = 90/91 (98%)
Strand = Plus / Plus
Query: 203 gcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcgcag 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13284 gcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcgcag 13343
Query: 263 gttcgagtcctgctgttgtcgttattttttt 293
||||||||||||||||||||||||| |||||
Sbjct: 13344 gttcgagtcctgctgttgtcgttatcttttt 13374
Score = 109 bits (55), Expect = 1e-23
Identities = 78/83 (93%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 705 ggcaacatggccgagcgtttaaggcgaaagat-ataaatcttttgggctctgcccgcgca 763
||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||
Sbjct: 13283 ggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcgca 13342
Query: 764 tgttcgagtcctggctgttgtcg 786
||||||||||| ||||||||||
Sbjct: 13343 ggttcgagtcct-gctgttgtcg 13364
>3x_Contig905
Length = 2723
Score = 99.6 bits (50), Expect = 1e-20
Identities = 77/86 (89%)
Strand = Plus / Minus
Query: 208 atggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcgcaggttcg 267
||||||||| ||||||||||| ||| | ||||||| ||||||||||||||||| |||||
Sbjct: 1791 atggccgagtggttaaggcgacagacttgaaatctgttgggctctgcccgcgctggttca 1732
Query: 268 agtcctgctgttgtcgttattttttt 293
| |||||||| |||||||||||||||
Sbjct: 1731 aatcctgctggtgtcgttattttttt 1706
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7063
Number of Sequences: 1807
Number of extensions: 7063
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 6
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)