BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZC05FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig847 1528 0.0
>3x_Contig847
Length = 2949
Score = 1528 bits (771), Expect = 0.0
Identities = 819/833 (98%), Gaps = 2/833 (0%)
Strand = Plus / Plus
Query: 86 tacagtctctaaccaaatcaccatctttagtgataacaatttcagtttcaggattcttac 145
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 tacagtctctaactatatcaccatctttagtgataacaatttcagtttcaggattcttac 70
Query: 146 aggatccacaaaggacaaacttagtgatgaaaccatccaatacgtcctgtaatttggctg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 aggatccacaaaggacaaacttagtgatgaaaccatccaatacgtcctgtaatttggctg 130
Query: 206 gttgatgagcaccattgacaatgtaacgatcattttcaacattgatagcagtttgggcac 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 gttgatgagcaccattgacaatgtaacgatcattttcaacattgatagcagtttgggcac 190
Query: 266 ccaattcaaacccgaaatatttgatgatgtatggagctggtctgtttaaagcacgggcaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 ccaattcaaacccgaaatatttgatgatgtatggagctggtctgtttaaagcacgggcaa 250
Query: 326 catccatggtattcataacaacagttttgataccattacctctaccttcaatcttagcct 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 catccatggtattcataacaacagttttgataccattacctctaccttcaatcttagcct 310
Query: 386 gaattggaggcattttataacggtagaaagggtcattgttgtctctgcaaatattgattg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gaattggaggcattttataacggtagaaagggtcattgttgtctctgcaaatattgattg 370
Query: 446 acatcttcggctactgttactaatctctagtcacttgtttctgctaccaccgtgtctttg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 acatcttcggctactgttactaatctctagtcacttgtttctgctaccaccgtgtctttg 430
Query: 506 acgttcttcaagtctggaaaacacaaaaacttttaaaagtaagttcgaactgatcctgta 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 acgttcttcaagtctggaaaacacaaaaacttttaaaagtaagttcgaactgatcctgta 490
Query: 566 ttggactgtaaaacggggtcattaacgccttcttgaatcatgtatatggaagaagttcat 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ttggactgtaaaacggggtcattaacgccttcttgaatcatgtatatggaagaagttcat 550
Query: 626 ctcatctcttagaagttcaacttcaactcttcgcgtgtggcaatcagatactgaggcctt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ctcatctcttagaagttcaacttcaactcttcgcgtgtggcaatcagatactgaggcctt 610
Query: 686 gattcctgaaaaattttcgtcgtttatggtgatatgaaaatacatgtcgaaacggagcat 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gattcctgaaaaattttcgtcgtttatggtgatatgaaaatacatgtcgaaacggagcat 670
Query: 746 gtgtcacgtgctttagctncaacgattcatttggctctgtgattgtttaagcatc-gttc 804
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 671 gtgtcacgtgctttagctccaacgattcatttggctctgtgattgtttaagcatcggttc 730
Query: 805 tgtaagagacatattacagggtataacatgggtgagatacgtattgtggttgttaaatgt 864
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 731 tgtaagagacatattacagggtataacatgggtgagatacgtatggtgg-tgttaaatgt 789
Query: 865 ttgaataccttncataacattactgctcctgggatttattgagttatttactg 917
||||||||||| ||| |||||||||| ||| ||||| ||||| ||||||||
Sbjct: 790 ttgaataccttcaatacaattactgctcgtggaatttagtgagtaatttactg 842
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6517
Number of Sequences: 1807
Number of extensions: 6517
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)