BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZC05RM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1594 1483 0.0
>3x_Contig1594
Length = 9813
Score = 1483 bits (748), Expect = 0.0
Identities = 814/827 (98%), Gaps = 7/827 (0%)
Strand = Plus / Plus
Query: 34 gcttccaaagcca-tctagccttatcgttggtaaccttgataccgttcttcttagcttca 92
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 6886 gcttccaaagccaatctagccttagcgttggtaaccttgataccgttcttcttagcttca 6945
Query: 93 gccaagatagcaattctgttcttggaagaaacgttgtgagcgatttcagcggcgaaggtc 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6946 gccaagatagcaattctgttcttggaagaaacgttgtgagcgatttcagcggcgaaggtc 7005
Query: 153 ttggtgtgcatcaacaatggggtcaaacccttgacgttggagacaagaacaaccttacgg 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7006 ttggtgtgcatcaacaatggggtcaaacccttgacgttggagacaagaacaaccttacgg 7065
Query: 213 ccatctggacccatgaacttggtcttcttgttggaaccgtaaccgatggttggttcagaa 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7066 ccatctggacccatgaacttggtcttcttgttggaaccgtaaccgatggttggttcagaa 7125
Query: 273 atgttacctctgaatcttcttctaacaacagagtcaatacccttttgctttctccagttt 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7126 atgttacctctgaatcttcttctaacaacagagtcaatacccttttgctttctccagttt 7185
Query: 333 tcagagactctgtggtaacggtcagagtgatgacgcttgaacttcttggtatgtttctta 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7186 tcagagactctgtggtaacggtcagagtgatgacgcttgaacttcttggtatgtttctta 7245
Query: 393 acaatctttgggtgtagagaagcagccatctgtttaaaaattaaagtaatatcgaaatat 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7246 acaatctttgggtgtagagaagcagccatctgtttaaaaattaaagtaatatcgaaatat 7305
Query: 453 tgttatcttgttagtattaatgttttttgcctgatagagcggatgttgtgctattccact 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7306 tgttatcttgttagtattaatgttttttgcctgatagagcggatgttgtgctattccact 7365
Query: 513 atgcctctatagcaaacggtatatcgacctaatgagctttttcttctgagatgaactggt 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7366 atgcctctatagcaaacggtatatcgacctaatgagctttttcttctgagatgaactggt 7425
Query: 573 gaaagtgaacaaattgtggcaagtataaggatgagttgagtntgtctaatattaataaaa 632
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 7426 gaaagtgaacaaattgtggcaagtataaggatgagttgagtttgtctaatattaataaaa 7485
Query: 633 catggaaatcttaaaaattctagattaagaaatccaggc-aatttttcgttatagatccc 691
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 7486 catggaaatcttaaaaattctagattaag-aatccaggcaaatttttcgttatagatccc 7544
Query: 692 cactgtaataaccctgtttcaatattacaaacattgtcattcattgccagtcattagttt 751
||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 7545 cactgtaataa-cctgtttcaatattacaacaattgtcattcattgccagtcattagttt 7603
Query: 752 tatatcgtatgatttttagtactcttacaaatcacaaaccacacatttgctcatcatatc 811
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 7604 tatatcgtatgatttttagtactcttacaaatcacaaaccacaca-ttgctcatcatatc 7662
Query: 812 ttaccaaataatttcatttcttaccccac-gtaattgatggatgaat 857
||||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct: 7663 ataccaaataatttcatttc-taccccacggtaatagatggatgaat 7708
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7339
Number of Sequences: 1807
Number of extensions: 7339
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)