BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZC06RM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1076 1449 0.0
>3x_Contig1076
Length = 4245
Score = 1449 bits (731), Expect = 0.0
Identities = 807/823 (98%), Gaps = 7/823 (0%)
Strand = Plus / Plus
Query: 49 tcaggtttaccatgtttgtgttgaacatttccatgacccccatactgaggagcattacta 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3350 tcaggtttaccatgtttgtgttgaacatttccatgacccccatactgaggagcattacta 3409
Query: 109 tcaggaatgcgtatgcaatataatcttggaaaaagtttctgatcctcttataaaactcgc 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3410 tcaggaatgcgtatgcaatataatcttggaaaaagtttctgatcctcttataaaactcgc 3469
Query: 169 ctttatttccactagcaagtaatagcgtggtttcatcttcaagtacaatagcatccgctc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3470 ctttatttccactagcaagtaatagcgtggtttcatcttcaagtacaatagcatccgctc 3529
Query: 229 ttgctgatgcatgcgatgctgatggagattgagaaccacgaagcttaatgatagaaatcg 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3530 ttgctgatgcatgcgatgctgatggagattgagaaccacgaagcttaatgatagaaatcg 3589
Query: 289 tactagtggaaatccatgtcaacaaaaatacaaacgtgtagaagacagcgaacgatttaa 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3590 tactagtggaaatccatgtcaacaaaaatacaaacgtgtagaagacagcgaacgatttaa 3649
Query: 349 agacaacagcaagatctaggtaaccgtcctctttagaatggaaccatggtaatttaatta 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3650 agacaacagcaagatctaggtaaccgtcctctttagaatggaaccatggtaatttaatta 3709
Query: 409 cctgcaacccaattacggaggataatccaaaacatgtcgtggggaaactgattgacaata 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3710 cctgcaacccaattacggaggataatccaaaacatgtcgtggggaaactgattgacaata 3769
Query: 469 gttttgtatcggggtacagctttgcacaagtaattaaagcgcaaaagtacagcgaactgg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3770 gttttgtatcggggtacagctttgcacaagtaattaaagcgcaaaagtacagcgaactgg 3829
Query: 529 tagcgattccaacaattgcaaatgccactacggagagggcaaaacatggatcggatccca 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3830 tagcgattccaacaattgcaaatgccactacggagagggcaaaacatggatcggatccca 3889
Query: 589 actggaaaacacaagataggtataaatagctgggaacgaaaccaatgaatgaaagccaac 648
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 3890 actggaaaacacaagataggtataaatagctgggaacgaaaccaatgaaggaaagccaac 3949
Query: 649 ttaatatcacaggggccgtgagaatcggataatatacctaataatggaggagtcaaataa 708
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3950 ttaatatcaca-gggccgtgagaatcggataatatacctaataatggaggagtcaaataa 4008
Query: 709 gctcctaaattccctgcagcataaagttaattaacgtcaagtggaagagtatcct-atct 767
||||||||||||||||||||||||||| |||||||||||||| |||||||||||| | ||
Sbjct: 4009 gctcctaaattccctgcagcataaagtaaattaacgtcaagt-gaagagtatcctaacct 4067
Query: 768 ttattcccacggtactgcatataccgaaatcatagaataa-gcccagcagaaatgggatg 826
| ||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||
Sbjct: 4068 taattcccacggtactgcatataccgaaatcatagaaaaacgcccagcagaaat-ggatg 4126
Query: 827 ag-attaagatat-atgaatgttgaattttgaatgggggacca 867
|| || |||| || |||||||||||||| ||||||| ||||||
Sbjct: 4127 agaataaagaaataatgaatgttgaattatgaatggtggacca 4169
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5813
Number of Sequences: 1807
Number of extensions: 5813
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)