BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZC07FM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1749 1104 0.0
>3x_Contig1749
Length = 22923
Score = 1104 bits (557), Expect = 0.0
Identities = 635/657 (96%), Gaps = 3/657 (0%)
Strand = Plus / Plus
Query: 87 atctatatttgttgtacgtttttttttgtataaagaaatagtgcaaaaatacatatgtcg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13270 atctatatttgttgtacgtttttttttgtataaagaaatagtgcaaaaatacatatgtcg 13329
Query: 147 caattgtgtgcaaatttgcgcagatgtccgacgaactaacacgcaaggtaacattaccgc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13330 caattgtgtgcaaatttgcgcagatgtccgacgaactaacacgcaaggtaacattaccgc 13389
Query: 207 tatgtttagtgacaaacactagaccgaaatgtttaccatagtgggtctactccgaagctc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13390 tatgtttagtgacaaacactagaccgaaatgtttaccatagtgggtctactccgaagctc 13449
Query: 267 atgaaggcgtatcgaatcgatgcttgtttcgcgttgtgtgcgtatttactcttactttct 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13450 atgaaggcgtatcgaatcgatgcttgtttcgcgttgtgtgcgtatttactcttactttct 13509
Query: 327 tgtgtgcattgtttagcttttcgtttttagataagaaatgtgtttacggttctgaaatct 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13510 tgtgtgcattgtttagcttttcgtttttagataagaaatgtgtttacggttctgaaatct 13569
Query: 387 gaatgtcggaaaagaccgttgttaaagacgtcgttgaggtctgatgtcaggattacaaga 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13570 gaatgtcggaaaagaccgttgttaaagacgtcgttgaggtctgatgtcaggattacaaga 13629
Query: 447 ttttacatcagtaagtcccaacgaacttgggaagttgacgttcaggtaggaaagcagtgc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13630 ttttacatcagtaagtcccaacgaacttgggaagttgacgttcaggtaggaaagcagtgc 13689
Query: 507 cgttacacgtgaatgtgcatacgcaataaggtgtaaagttctatctattaaactttcctt 566
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 13690 cgttacacgtg-atgtgcagacgcaataaggtgtaaagttctatctattaaactttcctt 13748
Query: 567 ttggaagcaagaacaaatcggaagataa-tgggtagtagtatatgtaaattttttcagct 625
| |||||||||| |||||||||||| || ||||||||||||||||||| |||||||||||
Sbjct: 13749 tgggaagcaagagcaaatcggaagaaaagtgggtagtagtatatgtaagttttttcagct 13808
Query: 626 gtttttggtggggttggtatataattttagattatggttacattattgggttacccctc- 684
|||||||||||| ||| ||||||||||||| ||||| ||||||||||| |||| | |||
Sbjct: 13809 gtttttggtgggtttgttatataattttagtttatgtttacattattgtgttagcgctct 13868
Query: 685 gaaagttgaatcgaacaaatccctaacctctttataacttattaagatgcaattcat 741
||| |||||||||| ||||||| | | ||||||||||||||||| |||||| |||||
Sbjct: 13869 gaatgttgaatcgatcaaatcctttagctctttataacttattatgatgcagttcat 13925
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7894
Number of Sequences: 1807
Number of extensions: 7894
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)