BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZC07RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1735 1265 0.0
>3x_Contig1735
Length = 19486
Score = 1265 bits (638), Expect = 0.0
Identities = 701/714 (98%), Gaps = 6/714 (0%)
Strand = Plus / Minus
Query: 43 gcttttgtctaagtttcagtccgttgagattcgaatgttacgtcaatggttgttctgcac 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4467 gcttttgtctaagtttcagtccgttgagattcgaatgttacgtcaatggttgttctgcac 4408
Query: 103 tcctcgtacgagatatgattgggaactcttattacgacctgtgttaaatggcagagtacc 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4407 tcctcgtacgagatatgattgggaactcttattacgacctgtgttaaatggcagagtacc 4348
Query: 163 tgtcacagtgaaggataatgctggatatttgttatattcctatggaaattctaataaaac 222
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 4347 tgtcacagtgaaggataatgctggatatttgttatattcctatggaaattctaaaaaaac 4288
Query: 223 atgattgaaactatatctaaaataaagccaagcaccatactacatcctaagatgaggttt 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4287 atgattgaaactatatctaaaataaagccaagcaccatactacatcctaagatgaggttt 4228
Query: 283 gttctagagagtcttaatccatttcctgagtttgaagcctttttttctggtccagttaac 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4227 gttctagagagtcttaatccatttcctgagtttgaagcctttttttctggtccagttaac 4168
Query: 343 ttcacggaacctacttcattgacaatcgagaactttgggctcctacttaactgatttcca 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4167 ttcacggaacctacttcattgacaatcgagaactttgggctcctacttaactgatttcca 4108
Query: 403 tttgcatcatagtatttgctattgcaagttaagtctgacttgtctaaattcacatattta 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4107 tttgcatcatagtatttgctattgcaagttaagtctgacttgtctaaattcacatattta 4048
Query: 463 cctttatcgcatttaacaccctttctgataaattcagtggctaatttcggaactactttc 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4047 cctttatcgcatttaacaccctttctgataaattcagtggctaatttcggaactactttc 3988
Query: 523 gcagtgatatccaaattggtgtatttgttggtacatgcaggactgttgttaactatccta 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3987 gcagtgatatccaaattggtgtatttgttggtacatgcaggactgttgttaactatccta 3928
Query: 583 gatgtagactttgtcttgacttatttttaagtctgtgctttgttggatgtggtgtttgct 642
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 3927 gatgtagac-ttgtcttgacttatttttaagtctgtgc-ttgttggatgtggtgtttgct 3870
Query: 643 tgaattggtttttgagcgcctcaaagtccttctattaattaaacatcgcccggtctcttc 702
|| |||||||||||||||||||||||||| |||| || ||||||||| |||||||||||
Sbjct: 3869 tgtattggtttttgagcgcctcaaagtcc-tctaatagataaacatcg-ccggtctcttc 3812
Query: 703 attaactggagacaaaaccgtaattgtttacttctttgggtgaactcataaact 756
||||||| ||||| || ||||||||||||||||| |||||||||||||||||||
Sbjct: 3811 attaact-gagaccaagccgtaattgtttacttc-ttgggtgaactcataaact 3760
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7134
Number of Sequences: 1807
Number of extensions: 7134
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)