BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZC08FM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1782 1304 0.0
>3x_Contig1782
Length = 24703
Score = 1304 bits (658), Expect = 0.0
Identities = 711/722 (98%), Gaps = 5/722 (0%)
Strand = Plus / Plus
Query: 84 tatccttacttggttgtttgcaatgagtttttggggctcttaacatggactagcgacgat 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4217 tatccttacttggttgtttgcaatgagtttttggggctcttaacatggactagcgacgat 4276
Query: 144 atttggaagagcgtattgatggttatatgctacatcgcagtaatcttgtatttccaagtg 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4277 atttggaagagcgtattgatggttatatgctacatcgcagtaatcttgtatttccaagtg 4336
Query: 204 gtggtaaggtactttggccatttcttgtttgtcggattgttatggggatattctgctttg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4337 gtggtaaggtactttggccatttcttgtttgtcggattgttatggggatattctgctttg 4396
Query: 264 gatacttttgtggaaactaccattaaggaaaagcctacactagatgacattgtgcatatc 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4397 gatacttttgtggaaactaccattaaggaaaagcctacactagatgacattgtgcatatc 4456
Query: 324 atttcttgtgtgtacacgaaggctgatttattactttcgcccttgtccgtatggacggga 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4457 atttcttgtgtgtacacgaaggctgatttattactttcgcccttgtccgtatggacggga 4516
Query: 384 aacgatattaagcggatacttttgacgatggcgtttctttcgcctgtctatgtaattgtg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4517 aacgatattaagcggatacttttgacgatggcgtttctttcgcctgtctatgtaattgtg 4576
Query: 444 tcaatattcatcttctcatcacagaaattggtattgatcgctggtgtttacgtgctcacg 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4577 tcaatattcatcttctcatcacagaaattggtattgatcgctggtgtttacgtgctcacg 4636
Query: 504 taccattcatcatggtctgtagtcactagaagattattgtggaaattaaaggttgtccag 563
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 4637 taccattcatcatggtctgtagtcactagaagattattgtggaaattaaaggttgtccgg 4696
Query: 564 ttacttgtcttttacataaccggtcttgatttgagtggtgttaacaagcatcaaggtgga 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4697 ttacttgtcttttacataaccggtcttgatttgagtggtgttaacaagcatcaaggtgga 4756
Query: 624 atcttcgctgcagtgcataagaaagtcaagaatctttcatcgagctcgattggatccgat 683
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 4757 atcttcgctgcagtgcataagaaagtcaagaatctttcatcgagctcgattggaaccgat 4816
Query: 684 gcagatgattgggaaccccattagattcacttatgtattatatgaggacccagaaacgtt 743
|||||||| |||||| ||||||||||||||||||||||||||||| || ||||| |||||
Sbjct: 4817 gcagatga-tgggaaacccattagattcacttatgtattatatga-gaaccagagacgtt 4874
Query: 744 ggctcggtattggcttggactgccaacatggttgaccttacgagagaatttcatggacag 803
|||||||||||||| |||||||||||||| ||||| |||||||||||| |||||||||||
Sbjct: 4875 ggctcggtattggc-tggactgccaacat-gttga-cttacgagagaagttcatggacag 4931
Query: 804 at 805
||
Sbjct: 4932 at 4933
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5897
Number of Sequences: 1807
Number of extensions: 5897
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)