BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZC08RM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1497 1348 0.0
>3x_Contig1497
Length = 11582
Score = 1348 bits (680), Expect = 0.0
Identities = 765/788 (97%), Gaps = 4/788 (0%)
Strand = Plus / Minus
Query: 47 gctttaaccctttttaaaatcatgatctattcctgattttctacggcggatcgagtaccg 106
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 9116 gctttaaccctttttaaaatcaggatctattcctgattttctacggcggatcgagtaccg 9057
Query: 107 atcacccagttcaaagtacaatggcagcattacccaagagaattatcaaagtatgttgaa 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9056 atcacccagttcaaagtacaatggcagcattacccaagagaattatcaaagtatgttgaa 8997
Query: 167 aatttttggaaacttacacgttcttttctatctgagtattaattaatagcgttatatcta 226
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 8996 aatttttggaaacttacacgttcttttctatctgagtattaattaatagcgttataacta 8937
Query: 227 accaagaaaaaaaaaaatatcatttacacaggaaactgaaaggttagtgagcgatccggt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8936 accaagaaaaaaaaaaatatcatttacacaggaaactgaaaggttagtgagcgatccggt 8877
Query: 287 ccccggaatcactgcagaaccacatgaggataatttacgttatttccaagtgacgataga 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8876 ccccggaatcactgcagaaccacatgaggataatttacgttatttccaagtgacgataga 8817
Query: 347 gggtccgcagcaaagtccctatgaaaatggggtcttccaactagaattgttcctaccgga 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8816 gggtccgcagcaaagtccctatgaaaatggggtcttccaactagaattgttcctaccgga 8757
Query: 407 tgattatccaatggaagcaccaaaggtaaggtttttgacaaaaatataccatcccaatat 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8756 tgattatccaatggaagcaccaaaggtaaggtttttgacaaaaatataccatcccaatat 8697
Query: 467 cgatcggttaggtagaatatgtctcgatgttttgaaaaataattggtcacctgcccttca 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8696 cgatcggttaggtagaatatgtctcgatgttttgaaaaataattggtcacctgcccttca 8637
Query: 527 aatcagaacagtacttttgtccgtgcaagccttgcttgcatctccgaatccgaatgatcc 586
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8636 aatcagaacagtacttttgtccgtgcaagccttgcttgcatctccgaatccgaatgaaaa 8577
Query: 587 gttagctaatgacgtcgctgaggaatggatcaagcatgaagataccgcaattgcaaaggc 646
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 8576 gttagctaatgacgtcgctgaggaatggatcaagcatgaagataccgcaattgaaaaggc 8517
Query: 647 ataagaatggaccaaactttacgccaaacctactcaggatgaggaaccagcaaaagaata 706
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8516 aaaagaatggaccaaactttacgccaaacctactcaggatgaggaaccagcaaaagaata 8457
Query: 707 actcgaattttgcaatgatcttagc-taaattctaactcacacataccatatttttattt 765
||||||||| |||||||||||| |||||||||| | ||||||||||||| ||||| |
Sbjct: 8456 actcgaattagaaaatgatcttagcataaattctaaataacacataccatatatttatat 8397
Query: 766 acatgaaacgtatatattcactaaact-gaaggttagcttgaaaacagattgttaaaccc 824
||||| ||||||||||||||||||||| || | ||||| || ||||||| ||||||||||
Sbjct: 8396 acatg-aacgtatatattcactaaactagaggattagc-tggaaacagaatgttaaaccc 8339
Query: 825 actgacat 832
||||||||
Sbjct: 8338 actgacat 8331
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,601
Number of Sequences: 1807
Number of extensions: 12601
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)