BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZC09RM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1313 1322 0.0
>3x_Contig1313
Length = 8010
Score = 1322 bits (667), Expect = 0.0
Identities = 713/724 (98%), Gaps = 5/724 (0%)
Strand = Plus / Plus
Query: 54 cattctttttattatatttaatgtgttcttagaatttcccaatgtagacctctctctatt 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2726 cattctttttattatatttaatgtgttcttagaatttcccaatgtagacctctctctatt 2785
Query: 114 cttgtcctttcaatagtttttttctccactaaggaatagcctttgtttaaatcccaaaca 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2786 cttgtcctttcaatagtttttttctccactaaggaatagcctttgtttaaatcccaaaca 2845
Query: 174 aaatgaaatcgttctttcacattaaatcttgaactcttgaatggaaactcggcaagtatg 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2846 aaatgaaatcgttctttcacattaaatcttgaactcttgaatggaaactcggcaagtatg 2905
Query: 234 gcagaccagttccttcacgctagataaaacattggctggtcggagttgtgttaagaaaaa 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2906 gcagaccagttccttcacgctagataaaacattggctggtcggagttgtgttaagaaaaa 2965
Query: 294 attatgttgaaacggattcttgtacttgattttgatggcactatcaccactagtgatacc 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2966 attatgttgaaacggattcttgtacttgattttgatggcactatcaccactagtgatacc 3025
Query: 354 accagtatcattgggcaatctgtttacaatttgaaatcagtacctgtcgcatggactcat 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3026 accagtatcattgggcaatctgtttacaatttgaaatcagtacctgtcgcatggactcat 3085
Query: 414 tataccaagatatacgaggaatgctatattccaaaaccagagaatttggcacctgatgct 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3086 tataccaagatatacgaggaatgctatattccaaaaccagagaatttggcacctgatgct 3145
Query: 474 tggaaagtggtttgtgattatgaacgtgcaagcagaaggtgtgagctaagttcaatcaac 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3146 tggaaagtggtttgtgattatgaacgtgcaagcagaaggtgtgagctaagttcaatcaac 3205
Query: 534 gaactagaattgcaggatcattttaaagatgtggtgatcaaagatctcctgcagctcgtt 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3206 gaactagaattgcaggatcattttaaagatgtggtgatcaaagatctcctgcagctcgtt 3265
Query: 594 aaggaaaaagtagatatcagacctggattacaggagctgatgcagcagtataacaagacg 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3266 aaggaaaaagtagatatcagacctggattacaggagctgatgcagcagtataacaagacg 3325
Query: 654 tacgtgnctttcg-tgaactggtccaaagacctcatacacgaccctaacgggtatttcca 712
|||||| |||||| ||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 3326 tacgtg-ctttcgttgaactggtccaaggacctcatacacga-cctaacgggtatttcca 3383
Query: 713 aantcgatatctactgntacgaattaaaatcacgtgatggggggaagtttacagcggaca 772
|| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 3384 aatcggatatctactgtaacgaattaaaatcacgtgat--ggggaagtttacagcggaca 3441
Query: 773 attt 776
||||
Sbjct: 3442 attt 3445
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6980
Number of Sequences: 1807
Number of extensions: 6980
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)