BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZC12FM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig603 1473 0.0
>3x_Contig603
Length = 2779
Score = 1473 bits (743), Expect = 0.0
Identities = 814/831 (97%), Gaps = 5/831 (0%)
Strand = Plus / Plus
Query: 80 caatgatttcctacctgcaattaaagatttggaaacgcgagcagaaggctcttttacctg 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1687 caatgatttcctacctgcaattaaagatttggaaacgcgagcagaaggctcttttacctg 1746
Query: 140 gaggatcgataactggtatgaattaacaaatgataaataccactccggaaagtacaaatt 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1747 gaggatcgataactggtatgaattaacaaatgataaataccactccggaaagtacaaatt 1806
Query: 200 tgatggattattttgggatttactaatatttccgcagggcaatcattctagaggagtttc 259
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1807 tgatggattagaatgggatttactaatatttccgcagggcaatcattctagaggagtttc 1866
Query: 260 gatatatcttgcacctcatccagatccggagcttgtatctgtggacaatgataacaccga 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1867 gatatatcttgcacctcatccagatccggagcttgtatctgtggacaatgataacaccga 1926
Query: 320 ttggcatgtttgcgcacagtttgctattgtgttctcgaaacctggcgaagatgcgaacgt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1927 ttggcatgtttgcgcacagtttgctattgtgttctcgaaacctggcgaagatgcgaacgt 1986
Query: 380 gcaactaagcaacaaggcatctcatagatttacagcgacagacaaagattgggggttttc 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1987 gcaactaagcaacaaggcatctcatagatttacagcgacagacaaagattgggggttttc 2046
Query: 440 aaattttattgaggttgattatttgaaacattattcgaggaacaaaccttctgggttttt 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2047 aaattttattgaggttgattatttgaaacattattcgaggaacaaaccttctgggttttt 2106
Query: 500 gaaccaaggagcagtgaatatatccgtatttatccgcagtatagaggatcctacgggagt 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2107 gaaccaaggagcagtgaatatatccgtatttatccgcagtatagaggatcctacgggagt 2166
Query: 560 actttggcacaactttttgaattacgattccaagataatgacagggtttgtgggatttaa 619
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 2167 actttggcacaactttttgaattacgattccaagaaaatgacagggtttgtgggatttaa 2226
Query: 620 aaatcaaggtgccacctgttatttgaatagtttactgcaatcatatcatttcaccaagtt 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2227 aaatcaaggtgccacctgttatttgaatagtttactgcaatcatatcatttcaccaagtt 2286
Query: 680 gtttaagaaaactggtgtatcaaattccgactgaagacgataatcctacaaattcagtgg 739
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 2287 gttt-agaaaactggtgtatcaaattccgactgaagacgagaatcctacaaattcagtgg 2345
Query: 740 ccctatcactacagagagcatttctatttgttacaaacttccaaatagcctctagataca 799
||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 2346 ccctagcactacagagagca-ttctatttgttacaaacttccaaagagcctctagataca 2404
Query: 800 actgaactaacaaaatcctttggtttgggatactgggtgatgcattcacacagcatgatg 859
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 2405 actgaactaacaaaatcctttgg-ttgggatact-ggtgatgcattcacacagcatgatg 2462
Query: 860 tccaagaattggaattgaattttattggaccgtttataaaacagaatgaaa 910
|||||||||| |||| |||||||| ||||||||||| || |||| ||||||
Sbjct: 2463 tccaagaatt-gaatagaattttaatggaccgtttagaacacaggatgaaa 2512
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6504
Number of Sequences: 1807
Number of extensions: 6504
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)