BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC31ZC12RM1.SCF screened BAC_end (928 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1352 1314 0.0 >3x_Contig1352 Length = 6660 Score = 1314 bits (663), Expect = 0.0 Identities = 722/738 (97%), Gaps = 4/738 (0%) Strand = Plus / Minus Query: 49 ttgggcagtagttctactagcccttgaatcgagttgagtcaaaagatgaatatagacgtt 108 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1808 ttgggcagtagttctactagcccttgaatcgagttgagtcaaaagatgaatatagacgtt 1749 Query: 109 ttccttcgacgattgttggaatccaaactttctggttaaatcattgaagatgtctttgat 168 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1748 ttccttcgacgattgttggaatccaaactttctggttaaatcattgaagatgtctttgat 1689 Query: 169 ttcctgttttgtgactggcacttgctcgtcctgataccaagccggaaattcaatctctgt 228 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1688 ttcctgttttgtgactggcacttgctcgtcctgataccaagccggaaattcaatctctgt 1629 Query: 229 catagagacttgaggacttgtcattacgatattctcaactctgccaaagaatatatcgcc 288 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1628 catagagacttgaggacttgtcattacgatattctcaactctgccaaagaatatatcgcc 1569 Query: 289 gaattgagttcttatttggtcttttctgtgatgtttgatcttgttcttgtgagacagtat 348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1568 gaattgagttcttatttggtcttttctgtgatgtttgatcttgttcttgtgagacagtat 1509 Query: 349 gttatctgaagtttcgtatctttagccgccaccccctagtttatatagtttggtacaacg 408 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1508 gttatctgaagtttcgtatctttagccgccaccccctagtttatatagtttggtacaacg 1449 Query: 409 gaaaaagaaaaatataaatcaaaaacacaaagcggcttgaaataatgtcagtcaaaattc 468 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1448 gaaaaagaaaaatataaatcaaaaacacaaagcggcttgaaataatgtcagtcaaaattc 1389 Query: 469 ccacgtatgcgagggggcaactcaaattcaatggggggaggggggagagattaaattaaa 528 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1388 ccacgtatgcgagggggcaactcaaattcaatggggggaggggggagagattaaattaaa 1329 Query: 529 agcgttattcctcacgcgctttcgaacagcaccattccacgtaaccgtgaataactcgat 588 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1328 agcgttattcctcacgcgctttcgaacagcaccattccacgtaaccgtgaataactcgat 1269 Query: 589 tgacggcgcattggtctctgagtgttagtaagctgagcgacagctgtttttctgttgttc 648 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1268 tgacggcgcattggtctctgagtgttagtaagctgagcgacagctgttttcctgttgttc 1209 Query: 649 caatatctgtactggatttaatggccaaaattttccaaaaaa-gaagatctaccggttca 707 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| | | Sbjct: 1208 caatatctgtactggatttaatggccaaaattttccaaaaaaggaagatctaccgctcaa 1149 Query: 708 aacttatgcttatttttgaccggtggtgaggaaaatcggaaaccaaggacttaaaagaaa 767 | || ||||| | ||||||||| |||||||||||||||||| ||||||| |||||||| Sbjct: 1148 acctaatgctca-ttttgaccg--tgtgaggaaaatcggaaacaaaggactaaaaagaaa 1092 Query: 768 aagattttcagtccacgt 785 |||| | ||||||||||| Sbjct: 1091 aagaatatcagtccacgt 1074 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7861 Number of Sequences: 1807 Number of extensions: 7861 Number of successful extensions: 58 Number of sequences better than 1.0e-20: 1 length of query: 928 length of database: 10,358,551 effective HSP length: 16 effective length of query: 912 effective length of database: 10,329,639 effective search space: 9420630768 effective search space used: 9420630768 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)