BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZD01FM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1046 1219 0.0
>3x_Contig1046
Length = 3637
Score = 1219 bits (615), Expect = 0.0
Identities = 662/671 (98%), Gaps = 5/671 (0%)
Strand = Plus / Plus
Query: 247 gtaactagtacctgacaattacctgatttggaaatgatatgagaaaagccgttaccttaa 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtaactagtacctgacaattacctgatttggaaatgatatgagaaaagccgttaccttaa 60
Query: 307 attatatgttggttttccagcattcaataatggtccggttttctctataatgaagcaatg 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attatatgttggttttccagcattcaataatggtccggttttctctataatgaagcaatg 120
Query: 367 cttgtgcttggtgcatgaaattgatattgatattaccaactccaaactttaaagtggtac 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cttgtgcttggtgcatgaaattgatattgatattaccaactccaaactttaaagtggtac 180
Query: 427 ctgatttttatacgtatggtaggatgataatactacccagcggtaataatgactattaac 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctgatttttatacgtatggtaggatgataatactacccagcggtaataatgactattaac 240
Query: 487 atatgcagaaatgatcaggaaactagcatgatatttgttgttcagtaaacgatgctgtga 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atatgcagaaatgatcaggaaactagcatgatatttgttgttcagtaaacgatgctgtga 300
Query: 547 catctgtaacctatcaagcgagtaagttgcatataaaaaggcttcatgatgtgatacctt 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 catctgtaacctatcaagcgagtaagttgcatataaaaaggcttcatgatgtgatacctt 360
Query: 607 caggacctggtgctaggtatgtttcatgtcacataactttattatttgaagctttttgtt 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 caggacctggtgctaggtatgtttcatgtcacataactttattatttgaagctttttgtt 420
Query: 667 ttagtattcttgtcctctccccaatcaacagataccaatacatacacaaatcttctacct 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttagtattcttgtcctctccccaatcaacagataccaatacatacacaaatcttctacct 480
Query: 727 cagcctctagtatcctgaaattatcatgcttcatcagtttttggtttttggcagctgcct 786
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 481 cagcctctagtatcctgaaattatcatgcttcatcag-ttttgggttttggcagctgcct 539
Query: 787 ttacactatcgtcatcagcatttgctgatgactattgatcatccactacgcgaactttat 846
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 540 ttacactatcgtcatcagcatttgctgatgactatgaatcatccactacgcgaactttat 599
Query: 847 ttcccacc-atatcaagcgg-attgatccaattgctaaacaaagaga-gttttgtatact 903
| |||||| ||||| ||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 600 tccccaccaatatc-agcggtattgatccaattgctaaacaaagagatgttttgtatact 658
Query: 904 gaaccagagga 914
|||||||||||
Sbjct: 659 gaaccagagga 669
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6579
Number of Sequences: 1807
Number of extensions: 6579
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)