BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZD01RM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1186 1572 0.0
>3x_Contig1186
Length = 4633
Score = 1572 bits (793), Expect = 0.0
Identities = 859/873 (98%), Gaps = 7/873 (0%)
Strand = Plus / Plus
Query: 48 catttctccagaagaaaagaatactctaaagacacaactaattactgatttgaaggcaat 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912 catttctccagaagaaaagaatactctaaagacacaactaattactgatttgaaggcaat 971
Query: 108 tgatattaaggacaagaacagtaagaagcaagtactagccaagtttactgatgcaaagaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972 tgatattaaggacaagaacagtaagaagcaagtactagccaagtttactgatgcaaagaa 1031
Query: 168 cttcttgacgttatctgaagaggtgagactacgcagaaaattcttgaagccagtgaaacc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 cttcttgacgttatctgaagaggtgagactacgcagaaaattcttgaagccagtgaaacc 1091
Query: 228 agaaacagaattgaagaaattggaagaaccactcaaaccttccaagaaaaatctaaccac 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1092 agaaacagaattgaagaaattggaagaaccactcaaaccttccaagaaaaatctaaccac 1151
Query: 288 cagacgttacaactacgaacaaaacacgatagatgtcattacaagaccaaagaccgattt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1152 cagacgttacaactacgaacaaaacacgatagatgtcattacaagaccaaagaccgattt 1211
Query: 348 cttgagcaaattgtaaatcttccccaagtcgttacgtaacaaaccatttagagccttgta 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1212 cttgagcaaattgtaaatcttccccaagtcgttacgtaacaaaccatttagagccttgta 1271
Query: 408 catattaacaaaagaaccacaacaatcatcatagtttaaactgaaaaaaacgaaagtttt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1272 catattaacaaaagaaccacaacaatcatcatagtttaaactgaaaaaaacgaaagtttt 1331
Query: 468 ttagagactatatatcatttggaaaggttaattccatattatatcgttaacgtatttaat 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1332 ttagagactatatatcatttggaaaggttaattccatattatatcgttaacgtatttaat 1391
Query: 528 ttgtctatatgtgtgagacaaaatccaaaacatactcttacattactatttttttgatat 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1392 ttgtctatatgtgtgagacaaaatccaaaacatactcttacattactatttttttgatat 1451
Query: 588 tggattgttttgaggtacaaaactatggcaggtgagccct-ttggatcaaccaggaggca 646
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1452 tggattgttttgaggtacaaaactatggcaggtgagccctattggatcaaccaggaggca 1511
Query: 647 attgagagatatcaacgatgtcattcatcttgctttgagcatcatcttcatcaccgacag 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1512 attgagagatatcaacgatgtcattcatcttgctttgagcatcatcttcatcaccgacag 1571
Query: 707 ataaatggngtcttggtagagccatcatacctgatcttgccacttncaagataccgaaag 766
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1572 ataaatgggttcttggtagagccatcatacctgatcttgccacttccaagataccgaaag 1631
Query: 767 gttccacaagtttcaag-atgcagagatanggnat-gtttagcacataatt-cacaatac 823
||||||||||||||||| ||||||||||| || || ||||||||||||||| ||||||||
Sbjct: 1632 gttccacaagtttcaagaatgcagagatacgggatggtttagcacataattccacaatac 1691
Query: 824 aactttgttcagcgatatcaacaatcttaccaccaaaggtaccagtcaagtttaaagatg 883
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||
Sbjct: 1692 aactttgttcagcgatatcaacaatcttaccaccaaagttaccagtcaag-ttagagatg 1750
Query: 884 tccgtttaaatgttcatggcttcaatctcaata 916
| ||||||||||||||| |||||||||||||||
Sbjct: 1751 t-cgtttaaatgttcat-gcttcaatctcaata 1781
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8773
Number of Sequences: 1807
Number of extensions: 8773
Number of successful extensions: 94
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)