BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZD02RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1441 1511 0.0
>3x_Contig1441
Length = 8574
Score = 1511 bits (762), Expect = 0.0
Identities = 857/880 (97%), Gaps = 8/880 (0%)
Strand = Plus / Plus
Query: 45 ttaccaaaatatccgacctctttatggagaatgaaattgatgagaatttactggaatatc 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4300 ttaccaaaatatccgacctctttatggagaatgaaattgatgagaatttactggaatatc 4359
Query: 105 aaaatgtcgcattgcctgacccaaccgaatttgataatgactttttgaataaaattttga 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4360 aaaatgtcgcattgcctgacccaaccgaatttgataatgactttttgaataaaattttga 4419
Query: 165 gtcaattttcatcagatctcagttgaatatttctatcggtagtatgttcttctttggtgt 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4420 gtcaattttcatcagatctcagttgaatatttctatcggtagtatgttcttctttggtgt 4479
Query: 225 tatgtgtatgtatgtatatgtatgtacttcactctgtaaaagggttataatattatgatt 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4480 tatgtgtatgtatgtatatgtatgtacttcactctgtaaaagggttataatattatgatt 4539
Query: 285 ttgaaaattaccttataaggtaactaggttgtcgttgaatttaatctatttaaacttttt 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4540 ttgaaaattaccttataaggtaactaggttgtcgttgaatttaatctatttaaacttttt 4599
Query: 345 ctttttttttagtctgccttctggatatttcaccaaagatcttcagtttaatatatatca 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4600 ctttttttttagtctgccttctggatatttcaccaaagatcttcagtttaatatatatca 4659
Query: 405 attaatggtaggacacctttccaattcgactggttgtcgtttatctgattgagtcaaata 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4660 attaatggtaggacacctttccaattcgactggttgtcgtttatctgattgagtcaaata 4719
Query: 465 tatatatattaatgggagatacatacgtttcgcttactgagcgcctagcatcgtccgaag 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4720 tatatatattaatgggagatacatacgtttcgcttactgagcgcctagcatcgtccgaag 4779
Query: 525 gaaaaagagccacctttatcaattggatcaccgaatcattatcatgcaaaacccttaata 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4780 gaaaaagagccacctttatcaattggatcaccgaatcattatcatgcaaaacccttaata 4839
Query: 585 ctgcggatgttcttgatgatactgtcgagtttctacgaagcataattgtggccgaagacc 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4840 ctgcggatgttcttgatgatactgtcgagtttctacgaagcataattgtggccgaagacc 4899
Query: 645 gtgatgtggttgaatacgaatccaaagtgatctcttatcagttatccaatctatgtgttc 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4900 gtgatgtggttgaatacgaatccaaagtgatctcttatcagttatccaatctatgtgttc 4959
Query: 705 tatgcttgaaggatttatatcanggaaaaccaggataggtgtatgatttcgctggttttt 764
|||||||||||||||||||||| | |||||||||| ||||||||||||||||||| ||||
Sbjct: 4960 tatgcttgaaggatttatatcaggaaaaaccaggaaaggtgtatgatttcgctgg-tttt 5018
Query: 765 ctttgttacattctgggcgagaactatgaagaaagtgttcaaaggtcctgcttcttagga 824
|||||| |||||||| ||||||||||||||||| ||||| |||||||||| ||||| ||
Sbjct: 5019 ctttgtaacattctgtgcgagaactatgaagaagttgttc-aaggtcctgc-tcttaaga 5076
Query: 825 agagattcaggaagctttaaagtacacacttattattctggtggcaaagaataatgctat 884
||||||||| ||||| | |||||||||||||| ||||||| || ||||| || |||||||
Sbjct: 5077 agagattcaagaagcataaaagtacacactta-tattctgttgtcaaag-attatgctat 5134
Query: 885 tacaatttttggggtcatttatatgccttgtttttctgaa 924
||||||||| | |||||||||||| ||||||||||||||
Sbjct: 5135 tacaatttt--gtgtcatttatatg-cttgtttttctgaa 5171
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,895
Number of Sequences: 1807
Number of extensions: 11895
Number of successful extensions: 124
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)