BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZD03FM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1419 1128 0.0
>3x_Contig1419
Length = 7355
Score = 1128 bits (569), Expect = 0.0
Identities = 634/649 (97%), Gaps = 5/649 (0%)
Strand = Plus / Minus
Query: 85 ctttcgccaaactatgtcatggataattgattgaatatcaaattgttcttcggcagcatt 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5607 ctttcgccaaactatgtcatggataattgattgaatatcaaattgttcttcggcagcatt 5548
Query: 145 agttggggtccaagagctgattgaatctctaatgaagttagtatcagtcttaacattgtc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5547 agttggggtccaagagctgattgaatctctaatgaagttagtatcagtcttaacattgtc 5488
Query: 205 caaaagctgatgttggtattctctgacagcattcaaaaccctaattctctttgtaagcaa 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5487 caaaagctgatgttggtattctctgacagcattcaaaaccctaattctctttgtaagcaa 5428
Query: 265 ttcatatctttcaaatatgctgaacatttccttactactgtgacaattttctaattcctt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5427 ttcatatctttcaaatatgctgaacatttccttactactgtgacaattttctaattcctt 5368
Query: 325 ccgtagaatggcaattagttcatcttcgattaatgaaatttgttgagaataatttttttg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5367 ccgtagaatggcaattagttcatcttcgattaatgaaatttgttgagaataatttttttg 5308
Query: 385 taaatgaacccaagaaacgacatcagcttttaaaacattaacgggcttaaccttatcata 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5307 taaatgaacccaagaaacgacatcagcttttaaaacattaacgggcttaaccttatcata 5248
Query: 445 aattctttctgtcctttcacggagaggtcggttatcgaccgctgtaagagcttccaggaa 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5247 aattctttctgtcctttcacggagaggtcggttatcgaccgctgtaagagcttccaggaa 5188
Query: 505 aatgtgatgttgttctctgaaagtcgatacatttgaaatacgttgcttaagtccctctgt 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5187 aatgtgatgttgttctctgaaagtcgatacatttgaaatacgttgcttaagtccctctgt 5128
Query: 565 ggagcaatttaacttc-aaaatattaatttcccagctttctttcgcattagctctcttat 623
|||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 5127 ggagcaatttaacttcaaaaatatgaatttcgcagctttctttcgcattagctctcttat 5068
Query: 624 catcaacgtgaaaatctttcaaatttatcttcaaaatttatcaagacccatgagaggccg 683
|||||||||| ||||||||| ||||||||||||||| ||||||||| |||||||| ||
Sbjct: 5067 catcaacgtg-aaatctttc-aatttatcttcaaaa-ttatcaagaaccatgaga-gcgt 5012
Query: 684 tctcttttatatttagaaactgttcttaatccatatgtacaaggtttgg 732
||||||| ||||||||||||||||| ||||||||| ||| ||||||||
Sbjct: 5011 tctctttaatatttagaaactgttcataatccataagtaacaggtttgg 4963
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8975
Number of Sequences: 1807
Number of extensions: 8975
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)