BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC31ZD04FM1.SCF screened BAC_end
         (916 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1668                                                        1594   0.0  

>3x_Contig1668 
          Length = 13429

 Score = 1594 bits (804), Expect = 0.0
 Identities = 823/827 (99%), Gaps = 2/827 (0%)
 Strand = Plus / Plus

                                                                        
Query: 86   atttcatgggtatgttacttagttcgaatgctacgtacgatgcctccttttggatggctt 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2344 atttcatgggtatgttacttagttcgaatgctacgtacgatgcctccttttggatggctt 2403

                                                                        
Query: 146  tgggtatttcttttggttattgcaccttctctttttataagtccatatttaaggttaaaa 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2404 tgggtatttcttttggttattgcaccttctctttttataagtccatatttaaggttaaaa 2463

                                                                        
Query: 206  tggatcttaaaaaacaatggatcagaacttactttgttatgcttagccaaaagtcaaaag 265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2464 tggatcttaaaaaacaatggatcagaacttactttgttatgcttagccaaaagtcaaaag 2523

                                                                        
Query: 266  tcagtagtggttcatgacaacaccaatctatcaacatgtcattacctgaattaccgccta 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2524 tcagtagtggttcatgacaacaccaatctatcaacatgtcattacctgaattaccgccta 2583

                                                                        
Query: 326  ggccagatcgtccaaagtctaccgaatcactccattgctccgatgttgagctacctcaaa 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2584 ggccagatcgtccaaagtctaccgaatcactccattgctccgatgttgagctacctcaaa 2643

                                                                        
Query: 386  atgtggatcttttgacctttaacgacattcaacagttacttcagcaacaggatatgccta 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2644 atgtggatcttttgacctttaacgacattcaacagttacttcagcaacaggatatgccta 2703

                                                                        
Query: 446  aagaatacgcaaaacgcttcaatgataacttagttcaggatatttcaaataaatccgtgg 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2704 aagaatacgcaaaacgcttcaatgataacttagttcaggatatttcaaataaatccgtgg 2763

                                                                        
Query: 506  cgtggaaagcacaagctgaacagttaatagaagggttgaataaattagctgaaaataagc 565
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2764 cgtggaaagcacaagctgaacagttaatagaagggttgaataaattagctgaaaataagc 2823

                                                                        
Query: 566  gtcatttgaagggagaattagattcctttaagaagcttgaattcgaatacatgaaaaaat 625
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2824 gtcatttgaagggagaattagattcctttaagaagcttgaattcgaatacatgaaaaaat 2883

                                                                        
Query: 626  ggcaagatcttgatcttctgatcaatagcaaattcagcaacgatgcgctaaagaagcaac 685
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2884 ggcaagatcttgatcttctgatcaatagcaaattcagcaacgatgcgctaaagaagcaac 2943

                                                                        
Query: 686  tgcgacacaatgtgatcaatctggatgaaaaatcttctcatatggttaacgaagtgcctg 745
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2944 tgcgacacaatgtgatcaatctggatgaaaaatcttctcatatggttaacgaagtgcctg 3003

                                                                        
Query: 746  ttactgacgaatctcttgacctgttttttggaacaatatgttaatgagcgcacagaatat 805
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 3004 ttactgacgaatctcttgacctg-tttttggaacaatatgttaatgagcgcacagaatat 3062

                                                                        
Query: 806  cacctacagcgagaaaaattggcaacatgggaaccacangatactttgaga-taccatga 864
            |||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||
Sbjct: 3063 cacctacagcgagaaaaattggcaacatgggaacaacaggatactttgagattaccatga 3122

                                                           
Query: 865  gtgtagtgcattattgattattgatgttattatgtaaaatacataga 911
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3123 gtgtagtgcattattgattattgatgttattatgtaaaatacataga 3169


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6263
Number of Sequences: 1807
Number of extensions: 6263
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)